bam or VCF files from GSE75010
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12 weeks ago
ahonya • 0

Hi all

I'm planning to run a variant calling analysis using Microarray data GSE75010 that contains GSE75010_RAW.tar and GSE75010_complete_dataset.csv.gz. I used to download the .fastq files using SRA Run numbers through Ubuntu/Linux to get .bam and VCF files. However, this is not the case as there are no SRA numbers. Someone can help me?

Regards,

Bony

bam file or VCF • 261 views
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Entering edit mode
12 weeks ago
ATpoint 80k

It's a gene expression array, not RNA-seq. Arrays do not allow variant calling as there is no digital sequencing data created.

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