doubt about usage of megahit
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12 weeks ago
meera • 0

i used trinity for rna seq assembly of a plant sample..but the process was oomkilled because of less memory. can i create assembly of a single plant rna sequence on megahit as it can handle large data

trinity megahit • 302 views
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you have not mentioned what kind of resources you have, how much data you have to process and what the expected genome/transcriptome sizes are - hence answering your question is not quite feasible.

in the end the hardware limits of your computing platform will limit what you can achieve on that platform

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