ANNOVAR Download Failing
Entering edit mode
12 weeks ago
tony • 0

Wondering if anyone else is running into this issue. I am attempting to download some tables from ANNOVAR for variant annotation. However, every download command I make results in a failed attempt. I have a bash script that reads:

# Command 1
perl -webfrom annovar -downdb -buildver hg38 clinvar_20221231 humandb/

# Command 2
perl -webfrom annovar -downdb -buildver hg38 refGeneWithVer humandb/

# Command 3
perl -webfrom annovar -downdb -buildver hg38 knownGene humandb/

# Command 4
perl -webfrom annovar -downdb -buildver hg38 ensGene41 humandb/

With the outcome failing with all attempts:

 (base) usr@usr-desktop:~/Desktop/yourmountingpoint/annovar$ source
 NOTICE: Web-based checking to see whether ANNOVAR new version is available ... Failed
 NOTICE: Downloading annotation database ... Failed
 NOTICE: Downloading annotation database ... Failed
 WARNING: Some files cannot be downloaded, including,

This is also the case when running

perl -webfrom annovar -downdb avdblist -buildver hg38 .

Is anyone else having issues with the website; it could be down but did not see anything on their github issues regarding this.

ANNOVAR • 304 views
Entering edit mode

Please verify your internet connectivity using, say, ping


Login before adding your answer.

Traffic: 1555 users visited in the last hour
Help About
Access RSS

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6