scRNA data analysis , how to compare pattern in multiple samples
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11 weeks ago

Hello Everyone .

I am new to single cell data .

I have 3 files in a folder

Sample5D_barcodes

Sample5D_features

Sample5D_matrix.mtx

I have other 2 samples in different two folders .

How can I compare these 3 sample's scRNA data to find distinct cell type cluster for each patient. How can I modify this command to do this in R.

Please help.

Thank you

R scRNA • 258 views
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Can you please ask a precise question rather than posting a wall of code? What is the main problem you have, what did you try? Did you follow established protocols such as the Seurat vignettes and the Biocondutor single-cell guide (https://bioconductor.org/books/release/OSCA/)?

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