Uniprot vs uniprotKB
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4 months ago

I saw that foldseek enables downloading the alphafold uniprot DB, and also uniprot50. Is it the same DB as the uniref50 that is downloadable in mmseqs2?

Thanks!

alphafold foldseek Uniprot mmseqs2 • 447 views
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UniProt creates UniRef50 using mmseqs2. If foldseek uses uniref50.fasta from UniProt then it should be the same database.

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