Parsing error when using sstacks
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Entering edit mode
3 months ago
Hayler Edu ▴ 40

Hello everyone.

I'm trying to do an analyze with the software stacks. Before I create the catalogs using the software RADProc. RADProc created three catalogs whose names are catalogs.snp.tsv, catalog.tags.tsv and catalog.alleles.tsv

The problem occurs when I try to execute sstacks.

This is my script

sstacks -P /mnt/d/Hayler/Secuencias_a_usar/Resultado_RADProc_23_01_2024/M2_m3/ -M /mnt/d/Hayler/Secuencias_a_usar/mapa_corrida_anderson_copia.txt -p 30

and this is the error

Searching for matches by sequence identity...

Parsing /mnt/d/Hayler/Secuencias_a_usar/Resultado_RADProc_23_01_2024/M2_m3/catalog.tags.tsv
Error parsing /mnt/d/Hayler/Secuencias_a_usar/Resultado_RADProc_23_01_2024/M2_m3/catalog.tags.tsv at line: 1. (9 fields).
Error: Unable to parse catalog, '/mnt/d/Hayler/Secuencias_a_usar/Resultado_RADProc_23_01_2024/M2_m3/catalog'
Aborted.

I can understand that the problem is with the file catalog.tags.tsv

This is the file

enter image description here

Some one can help me?

stacks sstacks • 191 views
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