snippy-multi bad Id error

Question

[sameenahmad1]

I am running snippy multi. This is my command

snippy-multi isolate.tab --ref"/home/sameen/Klebsella/Snippy/reference.fa" --cpus 3 >runme.sh

This is my isolate.tab file

BC0123IDRLAKUS2     /home/sameen/Klebsella/Snippy/contigs/BC0123-IDRL-AKU_S2_assembly.fasta
BL10442IDRLAKUS7    /home/sameen/Klebsella/Snippy/contigs/BL10442-IDRL-AKU_S7_assembly.fasta.

I am using contigs that I got from spade, but the error says bad Id. I did everything to make it work

[GenoMax]

Can you try without the quotes?

snippy-multi isolate.tab --ref /home/sameen/Klebsella/Snippy/reference.fa --cpus 3 > runme.sh
sh ./runme.sh

[sameenahmad1]

its giving the same error

[GenoMax]

BL10442IDRLAKUS7    /home/sameen/Klebsella/Snippy/contigs/BL10442-IDRL-AKU_S7_assembly.fasta.

Is there an extra period at the end of this line in your file? File is tab delimited?

Just to be explicit

snippy-multi /path_to/isolate.tab --ref /home/sameen/Klebsella/Snippy/reference.fa --cpus 3 > runme.sh