How to identify hub genes in Cytoscape from a WGCNA output?

Question

[pavelasquezv]

Hi all,

How to calculate hub genes in Cytoscape from a WGCNA output? I need to identify hub genes from a WGCNA output file.

All the best!

Alex

Answer 1

[subhiksha]

Load your data into cytoscape. Use the module assignment information to create a network where nodes represent genes and edges represent co-expression relationships within modules. calculate the network stats and from which you can identify hub genes.