Entering edit mode
10 weeks ago
Biologist
▴
290
I'm trying to check the sequence similarity between two genes using mummer
.
I have nucmer.coords
file with the following information:
[S1] [E1] | [S2] [E2] | [LEN 1] [LEN 2] | [% IDY] | [LEN R] [LEN Q] | [COV R] [COV Q] | [TAGS]
===============================================================================================================================
5080 5651 | 12880 13453 | 572 574 | 78.97 | 3568 4514 | 3.69 5.84 | Gene1 Gene2
5083 6078 | 39063 40043 | 996 981 | 79.75 | 3568 4514 | 1.92 3.21 | Gene1 Gene2
5217 6079 | 20844 21712 | 863 869 | 89.96 | 3568 4514 | 8.98 14.53 | Gene1 Gene2
5330 6079 | 36215 35465 | 750 751 | 59.60 | 3568 4514 | 3.85 5.95 | Gene1 Gene2
How to convert the above information into BED file?
Why did you delete the post, Biologist ?