Traveler with Infernal mapping failed

Question

[Larissa]

I'm trying to run r2dt to generate figures of tRNA secondary structures and I'm getting the following error:

Visualizando Contig01.trna6-MetCAT com M Met

Falha no mapeamento do Traveler with Infernal:

traveler --verbose --target-structure /temp/output/gtrnadb/Contig01.trna6-MetCAT-M_Met.fasta --template-structure --file-format traveler

/rna/r2dt/data/gtrnadb/vertebrate_mitochondrial/mito_vert_Met-traveler-template.xml /rna/r2dt/data/gtrnadb/vertebrate_mitochondrial/mito_vert_Met-traveler.fasta

--numbering "13,26" -l --draw /temp/output/gtrnadb/Contig01.trna6-MetCAT_map.txt /temp/output/gtrnadb/Contig01.trna6-MetCAT-M_Met >

/temp/output/gtrnadb/Contig01.trna6-MetCAT-M_Met.log

[GenoMax]

Can you look in /temp/output/gtrnadb/Contig01.trna6-MetCAT-M_Met.log file to see if there are any additional clues?

[anton.i.petrov]

Hi Larissa! I am the lead developer of R2DT and I've just noticed this question. Could you please email [e-mail] with your input sequence, if you still need help with this? Or you can create an issue on GitHub (https://github.com/rnacentral/r2dt/). Thank you!