Dsuite Dinvestigate error but no indication as to the source

Question

[Drew]

Can anyone tell me what this error code is saying?

There are 3 sets (populations/species) excluding the Outgroup
/builddir/build/BUILD/gcc-11.4.1-20230605/obj-x86_64-redhat-linux/x86_64-redhat-linux/libstdc++-v3/include/bits/basic_string.h:1040: std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::const_reference std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::operator[](std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size_type) const [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator; std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::const_reference = const char&; std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size_type = long unsigned int]: Assertion '__pos <= size()' failed.
Aborted (core dumped)

There is no indication as to what is causing this problem. I can run the program just fine with the tutorial data, so it clearly is not a problem with the installation. I'm assuming that this is an issue with something in my actual vcf. I have tried many different filter/vcf modification steps to try and address this, but nothing works.

I can provide more information as needed.

Any help would be greatly appreciated.

[Ram]

Aborted (core dumped) usually happens from a lack of resources. Are you running this on a local machine or a HPC node?

[Drew]

I am running on an interactive HPC node. I thought the 'Aborted (core dumped)' was due to the line of text just above it.

Also, there is no problem when I run the tutorial vcf dataset on the interactive node.

[Ram]

Demo files are designed to consume minuscule resources. Make sure you're giving the task as much RAM as it needs.

[Drew]

Memory was not the issue. After a lot of manually investigating my vcf file, I found that to be the issue. Once the issue was fixed, then I was able to complete it on an interactive node and as a batch job. The aborted core dumped was just a product of the program stopping.