GnomAD

Question

[ananta.kapoor]

Check the statistics for non-Finish Europeans in gnomAD and for non-cancer non-Finish Europeans (gnomad.broadinstitute.org). Deduce what is the fraction of the BRCA1 5382insC carriers among the cancer samples in this population. The genomic location of this variant is chr17:41209079 (Or 17-41209079-T-TG): options-

Around 15%

Around 1.5%

Around 0.15%

Around 0.015%

I am trying to answer this question but the gnomad site shoes no variants

[Pierre Lindenbaum]

you asked : DESEQ2 Code ; IDAT or Txt MINFI or LIMMA? ; TXT or IDAT format for differential DNA Methylation analysis

Don't forget to follow up on your threads, that is bad etiquette. If an answer was helpful, you should upvote it; if the answer resolved your question, you should mark it as accepted. You can accept more than one answer if they all work. If an answer was not really helpful or did not work, provide detailed feedback so others know not to use that answer.

Answer 1

[Pierre Lindenbaum]

but the gnomad site shoes no variants

it does

https://gnomad.broadinstitute.org/variant/17-41209079-T-TG?dataset=gnomad_r2_1

[ananta.kapoor]

Thankyouu I was using version 4 and version 2 that you sent worked. I had upvoted the other thread as well Sir.