Snakemake wrapper issue

Question

[Matvii Mykhailichenko]

snakemake --cores all EPA23-SSPQ_1_fastqc.html EPA23-SSPQ_1_fastqc.zip

command produces this error:

Assuming unrestricted shared filesystem usage for local execution.
Building DAG of jobs...
Using shell: /usr/bin/bash
Provided cores: 8
Rules claiming more threads will be scaled down.
Conda environments: ignored
Job stats:
job       count
------  -------
fastqc        1
total         1

Select jobs to execute...
Execute 1 jobs...

[Mon Mar 11 19:20:30 2024]
localrule fastqc:
    input: EPA23-SSPQ_1.fastq.gz
    output: EPA23-SSPQ_1_fastqc.html, EPA23-SSPQ_1_fastqc.zip
    log: logs/fastqc/EPA23-SSPQ_1.log
    jobid: 0
    reason: Missing output files: EPA23-SSPQ_1_fastqc.zip
    wildcards: sample=EPA23-SSPQ_1
    resources: tmpdir=/tmp, mem_mb=14000, mem_mib=13352

Skipped removing non-empty directory EPA23-SSPQ_1_fastqc.html
Traceback (most recent call last):
  File "/home/matviimykhailichenko/.snakemake/scripts/tmpvsb_85lf.wrapper.py", line 49, in <module>
    shell(
  File "/home/matviimykhailichenko/miniconda3/envs/fastqc/lib/python3.12/site-packages/snakemake/shell.py", line 297, in __new__
    raise sp.CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command 'set -euo pipefail;  fastqc --threads 1 --memory 14000 --quiet --outdir /tmp/tmp_6xfqni0 EPA23-SSPQ_1.fastq.gz  > logs/fastqc/EPA23-SSPQ_1.log 2>&1' returned non-zero exit status 2.
RuleException:
CalledProcessError in file /home/matviimykhailichenko/snakefile, line 15:
Command 'set -euo pipefail;  /home/matviimykhailichenko/miniconda3/envs/fastqc/bin/python3.12 /home/matviimykhailichenko/.snakemake/scripts/tmpvsb_85lf.wrapper.py' returned non-zero exit status 1.
[Mon Mar 11 19:20:31 2024]
Error in rule fastqc:
    jobid: 0
    input: EPA23-SSPQ_1.fastq.gz
    output: EPA23-SSPQ_1_fastqc.html, EPA23-SSPQ_1_fastqc.zip
    log: logs/fastqc/EPA23-SSPQ_1.log (check log file(s) for error details)
    conda-env: /home/matviimykhailichenko/.snakemake/conda/2d3396791fcc89db1f086f1e5ae1b3a0_

Removing output files of failed job fastqc since they might be corrupted:
EPA23-SSPQ_1_fastqc.html
Skipped removing non-empty directory EPA23-SSPQ_1_fastqc.html
Shutting down, this might take some time.
Exiting because a job execution failed. Look above for error message
Complete log: .snakemake/log/2024-03-11T192030.633107.snakemake.log
WorkflowError:
At least one job did not complete successfully.

the snake file is like that:

rule fastqc:
input:
    "{sample}.fastq.gz"
output:
    html="{sample}_fastqc.html",
    zip="{sample}_fastqc.zip"
params:
    extra = "--quiet"
log:
    "logs/fastqc/{sample}.log"
threads: 1
resources:
    mem_mb = 14000
wrapper:
    "v3.4.1/bio/fastqc"

I have dependencies for this wrapper (fastqc=0.12.1, snakemake-wrapper-utils=0.6.2). Naturally, the problem seems to be connected directly to wrapper, but I can't understand what it is specifically. If you could give me clues it would be good

[Ram]

What is the content of logs/fastqc/EPA23-SSPQ_1.log?