Anvio HMM source campbell_et_al
0
0
Entering edit mode
6 weeks ago
Hayler Edu ▴ 40

Hello

I'm trying to use anvi-get-sequences-for-hmm-hits, using the hmm source campbell_et_al but I don't know how can I download the Hmm_source campbell_et_al.

Someone can help me?

This is my pipeline

anvi-get-sequences-for-hmm-hits -c contigs.db --hmm-sources Campbell_et_al --get-aa-sequences -o bacterial_SCGs.faa --no-wrap

And when I execute the pipeline I have this error

Config Error: At least one of the HMM sources you requested are missing form the HMMs the
              contigs database knows about :/ Here they are: 'Campbell_et_al'
anvio • 180 views
ADD COMMENT

Login before adding your answer.

Traffic: 1566 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6