Entering edit mode
6 months ago
am29
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40
I have a vcf and bed file with around 17 million SNPs, indels, and SNVs. SNPs are annotated and have rsID, however, indels and SNVs don't have ID and appear as '.' I need all of them for my analyses, therefore I can't exclude any.
Is there any way to annotate indels and SNVs in a way to make them have provisional rsIDs? I already managed to rename bed file to contain something like baseposition_refallele_alt_allele as a variant ID, however, the software I am using (BFMAP, SLEMM) recognizes only rsIDs.
What can I do?
Thank you Pierre! It works!