Deleted:CIBERSORTx single cell reference sample file
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4 weeks ago
feather-W • 0

Hi,

I want to use CIBERSORTx to deconvolution the bulk RNA-seq data of atherosclerotic ldlr-/- mouse aorta. Now I need a gene expression matrix per cell type, which means the rows represent genes and the columns represent cell type. Importantly, the matrix must be derived from scRNA-seq.

This matrix will look like matrix in this url: https://cibersortx.stanford.edu/images/tutorial2_image0.png

I will use this matrix to build a signature matrix but I don't find the matrix I need. So my question is if there are any database which contains this gene expression matrix per cell type of atherosclerotic ldlr-/- mouse aorta from scRNA-seq data?

Thanks in advance

scRNA-seq CIBERSORTx reference • 156 views
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