Entering edit mode
4 weeks ago
feather-W
•
0
Hi,
I want to use CIBERSORTx to deconvolution the bulk RNA-seq data of atherosclerotic ldlr-/- mouse aorta. Now I need a gene expression matrix per cell type, which means the rows represent genes and the columns represent cell type. Importantly, the matrix must be derived from scRNA-seq.
This matrix will look like matrix in this url: https://cibersortx.stanford.edu/images/tutorial2_image0.png
I will use this matrix to build a signature matrix but I don't find the matrix I need. So my question is if there are any database which contains this gene expression matrix per cell type of atherosclerotic ldlr-/- mouse aorta from scRNA-seq data?
Thanks in advance