singlecell annotation
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7 months ago
kayah ▴ 20

I want to annotate my file to reference file(downloaded from single cell portal). I want to annotate cell_type! But don't know what packages to use or how to do this. This picture is my reference file. I already did singleR but this reference data is usually about lung data. And also I definitely not well understand how annptation is working..... I want to use mouse Wat data which if fit well to my data. I need your help! Thank you so much! enter image description here enter image description here enter image description here

scRNA-seq annotation • 378 views
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https://cellxgene.cziscience.com/
https://www.celltypist.org/

have been mentioned by others for annotation purposes.

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thank you! so much!!

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