Korean human genome reference file
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4 weeks ago
SeoGyun • 0

How can I get Korean reference file..? Korean reference is no longer provided by sites..

GWAS reference imputation • 592 views
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From NCBI: https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_001712695.1/

Use the Download button or curl/datasets.

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Thanks..... But I want to do imputation, so I have to make it as a vcf file, but the site only has a fatsa file....

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4 weeks ago

Is is this one - KOREF ? There might be multiple versions. https://www.ncbi.nlm.nih.gov/bioproject/PRJNA294231/

If it is, then take that and download from NCBI, or alternatively from the EBI - mostly a bit easier I find:

https://www.ebi.ac.uk/ena/browser/view/GCA_001712695.1

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