KEGG Pathways
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7 weeks ago
Sudip • 0

I am trying to extract all the genes that are present in a particular GO term in Arabidopsis. I was able to do so with this code,

go.trial <- getBM(attributes = c("ensembl_gene_id", "external_gene_name"),
      filters = "go", values = "GO:0006779", mart = ensembl)

But now I want to do this for the KEGG pathways, Is the below code correct?

go.trial <- getBM(attributes = c("ensembl_gene_id", "external_gene_name"),
      filters = "kegg", values = "ath03010", mart = ensembl)
r RNA-seq • 389 views
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is the below code correct

Does it give you what you need?

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No it does not. Do you know of a way that can help me achieve what I want?

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Give us as much detail as you can. What error does it give you?

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