Summary Statistics SNPs not found in Target data
0
0
Entering edit mode
11 days ago

Hello,

As the title says, the summary statistics I'm planning on using for calculating the PRS has around 50ish SNPs and from those, 20 are not recognized when I use the --score function in plink. How do you deal with this issue? There's other SNPs in the target dataset that have SNPs close to the BP location of the unmatched SNPs, but I'm unsure what are some next steps.

SNP plink PRS • 120 views
ADD COMMENT

Login before adding your answer.

Traffic: 1469 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6