Entering edit mode
3 months ago
pirku
•
0
I created many random sequences by using NullSeq 2.0, and saved those sequences in a fasta format. Now I want to get the genomic coordinates and make a bedfile. Any ideas on how to do that?
you could run blast or any other aligner to get the coordinate(s) of your fasta on a reference genome.
I tried running BLAT, but the output looks like this. Seems like none of the sequences were mapped/aligned
there is not enough information. you have to show us the command you used, a snapshot of your fasta...