Linking AMR Genes to Taxonomy in Soil Metagenomics
Entering edit mode
4 weeks ago
LuciaNhu • 0

Hi everyone,

I'm working with a shotgun metagenomic dataset from soil samples. I've used MEGARes and AMR++, v3.0 to successfully identify AMR genes and their resistance mechanisms through resistome analysis. Additionally, I've used Kraken2 to perform microbiome analysis and obtain taxonomic classifications for the organisms present.

My question is: how can I best link the identified AMR genes to their specific source organisms within the metagenomic data? While I have the resistome and taxonomic profiles, I'm looking for recommendations on methods to connect these datasets and determine which organism harbors each AMR gene.

Thanks in advance for any advice!

metagenomics bacteria wgs AMR resistome • 132 views

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