VEP annotation tool: "." isn't numeric in addition (+)
0
0
Entering edit mode
24 days ago
emmanouil.a ▴ 130

I was running VEP on a WGS VCF and in the logs files I had some warnings. In most of the cases warnings are not fatal but I would like to understand where to look in my VCF (it has ~5M variants)

WARNING: 538401 : Argument "." isn't numeric in addition (+) at .../ensembl-vep-111.0-0/Bio/EnsEMBL/Variation/Utils/Sequence.pm line 970.
Argument "." isn't numeric in addition (+) at .../ensembl-vep-111.0-0/Bio/EnsEMBL/Variation/Utils/Sequence.pm line 970.
Argument "." isn't numeric in addition (+) at .../ensembl-vep-111.0-0/Bio/EnsEMBL/Variation/Utils/Sequence.pm line 970.

How can I find which variants gives the above warning? Thanks!

VEP VCF • 118 views
ADD COMMENT

Login before adding your answer.

Traffic: 1279 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6