getting RNA-seq raw counts from Kallisto
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10 days ago
Meghan.T • 0

Hi everyone,

I am using kallisto quant for RNA-seq data analysis. After running kallisto quant the output looks like this: enter image description here

I am going to perform DEG analysis with DESeq2 and need raw counts, but the estimated counts are not integer values. Do you have any suggestions?

also posted on kallisto github: https://github.com/griffithlab/rnaseq_tutorial/issues/51

counts raw RNA-seq Kallisto • 249 views
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10 days ago
GenoMax 143k

See answer from @dsull here: https://support.bioconductor.org/p/9156404/#9156407

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Great. Thank you very much!

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