Entering edit mode
11 weeks ago
Akash D
▴
60
I need to divide a Cytoscape network (nodes) into pathway groups. Which plugin would be the best?
Regards,
SKY
I need to divide a Cytoscape network (nodes) into pathway groups. Which plugin would be the best?
Regards,
SKY
Not exactly clear what you are trying to achieve. Obviously, a given protein can be part of multiple pathways, so trying to cluster purely on pathway membership would be difficult. ClueGO can be used to provide a sense of enrichment by cluster, and EnrichmentMap can give you a good overall view of the enrichment. Maybe you could be a little clearer as to what you are trying to achieve.
-- scooter
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