Enrichment Analysis of Pathways
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9 days ago
Akash D ▴ 60

I need to divide a Cytoscape network (nodes) into pathway groups. Which plugin would be the best?

Regards,
SKY

Enrichment-Analysis cytoscape • 340 views
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Rgds

Don't use SMS/IM lingo on professional forums. I've fixed your post this time.

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6 days ago
Scooter ▴ 280

Not exactly clear what you are trying to achieve. Obviously, a given protein can be part of multiple pathways, so trying to cluster purely on pathway membership would be difficult. ClueGO can be used to provide a sense of enrichment by cluster, and EnrichmentMap can give you a good overall view of the enrichment. Maybe you could be a little clearer as to what you are trying to achieve.

-- scooter

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