I encountered a problem while installing packager 'ChIPseeker'
0
0
Entering edit mode
8 months ago
Pallondyle • 0

I am trying to install ChIPseeker on the lab server. I have never encountered such a problem on my own computer before.

> library(ChIPseeker)
Error: package or namespace load failed for ‘ChIPseeker’ in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
 there is no package called ‘curl’
ChIPseeker curl BiocManager • 2.2k views
ADD COMMENT
0
Entering edit mode
 there is no package called ‘curl’ 

install this first

install.packages("curl")
ADD REPLY
0
Entering edit mode

I tried, and the error message is as follows:

In file included from ada.cpp:3:0:
ada.h:5255:10: fatal error: charconv: No such file or directory
 #include <charconv>
          ^~~~~~~~~~
compilation terminated.
/usr/lib/R/etc/Makeconf:200: recipe for target 'ada.o' failed
make: *** [ada.o] Error 1
ERROR: compilation failed for package ‘curl’
ADD REPLY
0
Entering edit mode

you have windows or linux(cent OS or ubuntu)?

ADD REPLY
0
Entering edit mode

The server appears to operate based on Ubuntu.

ADD REPLY
0
Entering edit mode
sudo apt install curl 

this one should fix

ADD REPLY
0
Entering edit mode

I do not have administrator rights on the server and cannot use the sudo command. It seems that I can only download the data to my computer for downstream analysis. Anyway, thank you for your advice.

ADD REPLY
2
Entering edit mode

Create a conda environment. You don't need admin privileges and can install almost anything you need.

ADD REPLY

Login before adding your answer.

Traffic: 1366 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6