Hi everyone,
I'm working with human RNA-seq data and performed a GSEA using the software (GSEA 4.3.3). When I try to export the results as an enrichment map to Cytoscape, it asks me to set two cutoffs: one for the p-value and one for the FDR. Since the FDR is calculated from the p-value, I'm wondering — wouldn't applying both filters be redundant? Thanks in advance for your help!