mm10 blacklist regions detailed information

Question

[annaA]

Hellio,

I have a rather simple question, I am looking for a detailed information about the balcklisted regions of mm10. Meaning what they are, centomeric, telomeric etc . I can find this info gor human genome hg19 as a google sheet https://docs.google.com/spreadsheets/d/1s_LNh4uAD3aIrr4TbOji7ehDMiFs0av0OD7prOk0jkA/edit?hl=en&pli=1&hl=en&pli=1&gid=5#gid=5. but no for mm10. Is anyone more familiar with balcklists so could help me with that ?

Thanks in advance, Anna

[GenoMax]

If you are OK with ENCODE blacklists then you can find a BED file with the information at: https://github.com/Boyle-Lab/Blacklist/tree/master/lists

You will need to annotate the list if you just have chromosomal region info (telomere etc).

Another source for regions to exclude: https://github.com/dozmorovlab/excluderanges?tab=readme-ov-file