How to Remove Phasing Information from a VCF File?

Question

[optimistsso4co3]

Can you just change pipe "|" to slash "/" in genotype GT field with e.g. bcftools annotate --set-format '%GT=[%TGT]\n'?

Answer 1

[Pierre Lindenbaum]

bcftools +setGT   in.vcf -- -t a -n u

[Mwangana]

How can I use bcftools +setGT to get genotypes without phase e.g. "|" or "/"? For example, instead of 1|1 or 1/1, I would like to get 11