Setting haploid missing to diploid missing in VCF

Question

[ma17]

Hi,

bcftools +setGT plugin allows to filter genotypes based on specific criteria.

for e.g.

bcftools +setGT in.vcf -- -t ./x -n .

sets partially missing variants to missing ./.

I have some haploid missing genotypes . that I want to set as diploid missing ./., however the command above does not do this, is there a quick way to do this?

Thanks

[athena]

I am also having the same problem. Did you figure this out?

Thank you in advance!