downloading raw bam files from pacbio sequencer

Question

[pranavdatar01]

Is there any source from which I can download raw subreads in bam format generated by PacBio sequencers? I wanted to download example data and test something on it.

[GenoMax]

Have you checked : https://www.pacb.com/connect/datasets/

[pranavdatar01]

Yes, I did check. They don't have any.

[pranavdatar01]

I want to download the HDF5 .bax.h5 files or BAM/SAM .subreads.[bs]am files which out from the pacbio sequencer. Are there any sample demo files available online?

[GenoMax]

If they are not available at PacBio site then your chances of getting them are going to be significantly reduced. Only other source may be SRA, in case people submit these as original data in their submission.

Answer 1

[Arup Ghosh]

Try: https://www.google.com/search?q=site:https://downloads.pacbcloud.com/public/dataset/+%22subreads%22

[GenoMax]

pranavdatar01 look through some of the top entries from this search for subread BAM's. Here is one example: https://downloads.pacbcloud.com/public/dataset/Melanoma2019_IsoSeq/subreads/COLO829BL/