lollipop plot showing DNA sequence

Question

[varga.luca]

Hi all!

I want to make a plot like these but I can't find any tool that would allow for showing a DNA track on the x-axis:

Both figures are from Gavira et al. 2020 in Leukemia, does anyone have any idea what kind of package or anything they could've used? I couldn't find info even in the supplementary data.

Thanks!

[Arup Ghosh]

ProteinPaint can create similar visualisations.

[Bastien Hervé]

Honestly, I think it is just a regular dotplot that they edited afterwards

[LChart]

The axis style and font is a dead giveaway. Probably the DNA sequence, points, and the vertical bars from (-4) to (1) are done in R; bu tthe shading, "hotspots" and "protein" tracks were probably added in post.