Question: Association Analysis Snp Which Package To Use
gravatar for edufoju
5.3 years ago by
edufoju10 wrote:

Dear all.

I have genotyped different SNP arrays with the package crlmm. Once I get the large matrix object (snpmatrix) or snpset with genotyped information, which package should I use to get an association analysis?To know which snps are more present in the disease samples.

I've seen some packages but they need a different input (plink,bam..), that I don't have.

Thank you

R snps snp • 1.4k views
ADD COMMENTlink written 5.3 years ago by edufoju10

Duplicate of Once I got the SNParray genotyped , what's the next step ?

ADD REPLYlink written 5.3 years ago by zx87547.8k
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