Can Anyone Suggest Me A Program For Converting Dot-Bracket Notation Format To Standard Hybridization Format.

Question

[gauravdube007]

Hello,

I am interested in converting: Dot-Bracket notation format to Standard hybridization format.

Example :

Dot-Bracket notation -

UGACGAUCAAAGGUGGGCCACU&GUGGCCAACUUCUAGUCAU    
((((......((((.((((((.&)))))).))))...)))).

to Standard hybridization format -

     GAUCAA        
 UGAC      AGGUGGGCCACU    
 ||||       |:||.||||||.    
UACUG      UUCAACCGGUG    
      AUC

or possibly like this :

 UGACGAUCAAAGGUGGGCCACU
 ||||  | | ||||.||||||.
UACUG--A-UCUUCAACCGGUG