Extracting gene - gene Interactions From Reactome
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7.0 years ago
cytoscapeB • 0

Hi everybody,

I have to use the Reactome database to retrieve information about genes. 
In fact, the application takes as input: a file that contains a list of gene. After, it must Look for the existence of each gene list in the database ( Reactome ) 
Then, it try to extract his second partner. ( 

However, it's not clear to me how to retrieve the Interactions between gene frome Reactome. 
I would Greatly appreciate any hints Where the interaction data are so I can write a script to extract em.

reactome interaction gene protein • 1.9k views
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Entering edit mode
7.0 years ago
pcantalupo ▴ 120

Hello,

You can find the interaction data for human here and for non-human here. The format is described here

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