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Answer: A: Samtools Mpileup On Single Bam With Multiple Samples
updated 5.2 years ago by 44k • written 13.4 years ago by ★ 1.9k
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Answer: A: Why some SNP databases don't contain the strand information
updated 5.2 years ago by 44k • written 9.4 years ago by ★ 1.9k
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1
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Comment: C: Prediction of the functional effect of nsSNPs
updated 5.3 years ago by 44k • written 10.2 years ago by ★ 1.9k
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1
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3.8k
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Comment: C: Prediction of the functional effect of nsSNPs
updated 5.3 years ago by 44k • written 10.2 years ago by ★ 1.9k
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1
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3.8k
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Answer: A: Prediction of the functional effect of nsSNPs
updated 5.3 years ago by 44k • written 10.2 years ago by ★ 1.9k
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1
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Answer: A: SNP amino acid position from chromStart
updated 5.3 years ago by 44k • written 10.2 years ago by ★ 1.9k
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Answer: A: SNP to gene mapping into reference genome
updated 5.3 years ago by 44k • written 10.4 years ago by ★ 1.9k
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Answer: A: How to compare 2 VCF files
updated 5.3 years ago by 44k • written 10.4 years ago by ★ 1.9k
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Answer: A: Selecting variants from a VCF file
updated 5.3 years ago by 44k • written 10.5 years ago by ★ 1.9k
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Answer: A: filtering a VCF file
updated 5.3 years ago by 44k • written 10.7 years ago by ★ 1.9k
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Answer: A: CGI- VCF file
updated 5.3 years ago by 44k • written 10.7 years ago by ★ 1.9k
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1
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Answer: A: error ,,, file.vcf --> file snpEff.vcf
updated 5.3 years ago by 44k • written 10.8 years ago by ★ 1.9k
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1
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Answer: Answer: count number of variants per gene from .vcf annovar&snpsift
updated 3.3 years ago by 44k • written 10.8 years ago by ★ 1.9k
3
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1
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7.7k
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Answer: A: How To Get All Contig Boundaries In A Bam File.
updated 5.3 years ago by 44k • written 13.4 years ago by ★ 1.9k
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Answer: A: Identifying Genes That Lie Either Side Of Intergenic Regions
updated 5.3 years ago by 44k • written 11.7 years ago by ★ 1.9k
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Comment: C: Gene Ontology Categories
updated 5.3 years ago by 44k • written 13.7 years ago by ★ 1.9k
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Answer: A: Snp Function Explaination In Intergenic Region
updated 5.4 years ago by 44k • written 13.4 years ago by ★ 1.9k
8
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Answer: A: Defining Your Reference Genome From Ucsc For Human Ngs Studies
updated 5.4 years ago by 44k • written 13.7 years ago by ★ 1.9k
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Comment: C: Snp Number From Whole-Genome Sequencing
updated 5.4 years ago by 44k • written 13.8 years ago by ★ 1.9k
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Comment: C: Navigating Public Data For A Variant / Variant Annotation
updated 5.4 years ago by 44k • written 14.0 years ago by ★ 1.9k
4
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5
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Answer: A: How To Extract Random Snps From Whole Genome Data?
updated 5.4 years ago by 44k • written 13.0 years ago by ★ 1.9k
0
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1
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3.1k
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Answer: A: Issue with ExAC and 1000g hg38 lifted-over data and systematic failure of annota
7.7 years ago by Pablo ★ 1.9k
1
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Comment: Comment: snpEff suitable for Bathycoccus prasinos?
updated 24 months ago by 44k • written 9.7 years ago by ★ 1.9k
2
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0
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Answer: Answer: Variant annotation: Multiple values in some fields like SIFT_Pred
updated 24 months ago by 44k • written 9.7 years ago by ★ 1.9k
1
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0
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4.1k
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Answer: Answer: Which GRCh37 version to use from snpEff databases for BAMs mapped with GRCh37-li
updated 2.7 years ago by 44k • written 9.8 years ago by ★ 1.9k
2
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1
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Answer: Answer: Freebayes and snpeff give different number of SNPs
updated 2.9 years ago by 44k • written 10.1 years ago by ★ 1.9k
2
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Comment: Comment: Computational infrastructure required for RNAseq analysis, genome annotation and
updated 3.0 years ago by 44k • written 10.2 years ago by ★ 1.9k
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1
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Comment: C: Mission Impossible: you have 1 minute to analyze the Ebola Genome
10.2 years ago by Pablo ★ 1.9k
3
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1
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6.6k
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Answer: Answer: Mission Impossible: you have 1 minute to analyze the Ebola Genome
updated 3.0 years ago by 44k • written 10.2 years ago by ★ 1.9k
3
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1
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Comment: Comment: Confusion with High Confidence SNP Calls (Overlap B/w RNA-seq & WGBS calls) and
updated 3.0 years ago by 44k • written 10.2 years ago by ★ 1.9k
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Comment: C: SNP to gene mapping into reference genome
10.4 years ago by Pablo ★ 1.9k
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1
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6.0k
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Answer: Answer: Converting VarScan output (.txt) format to .vcf for annotation
updated 3.1 years ago by 44k • written 10.4 years ago by ★ 1.9k
1
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0
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4.4k
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Comment: Comment: snp analysis using a software tool
updated 3.2 years ago by 44k • written 10.6 years ago by ★ 1.9k
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1
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4.4k
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Answer: Answer: snp analysis using a software tool
updated 3.2 years ago by 44k • written 10.6 years ago by ★ 1.9k
2
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2
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9.9k
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Comment: Comment: snpEFF Database building error
updated 3.3 years ago by 44k • written 10.7 years ago by ★ 1.9k
3
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Answer: A: Variant Function Prediction
10.8 years ago by Pablo ★ 1.9k
1
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3.0k
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Answer: A: Snps In Protein Domains
10.8 years ago by Pablo ★ 1.9k
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Comment: C: How To Annotate The Snps Produced By Gatk?
10.8 years ago by Pablo ★ 1.9k
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5.9k
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Comment: C: 3' Rna Seq Pipeline
11.7 years ago by Pablo ★ 1.9k
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1
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2.7k
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Comment: C: Snp Frequency In Cases Vs Controls
11.8 years ago by Pablo ★ 1.9k
1
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1
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2.7k
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Comment: C: Snp Frequency In Cases Vs Controls
11.8 years ago by Pablo ★ 1.9k
1
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1
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2.5k
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Answer: A: I Have Two Lists Of Peaks And I Want To See If They Are Associated With Differen
11.8 years ago by Pablo ★ 1.9k
3
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0
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Answer: A: In Snpeff-Impact, What Is Difference Between Stop_Gained And Non-Synonymous_Stop
12.4 years ago by Pablo ★ 1.9k
2
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Answer: A: Non-Uniquely Mapped Reads
12.6 years ago by Pablo ★ 1.9k
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0
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10k
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Comment: C: Define If Chip Peaks Are Located In Exon, Intron, Promoter, 3Prime Utr
12.7 years ago by Pablo ★ 1.9k
3
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1
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10k
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Answer: A: Define If Chip Peaks Are Located In Exon, Intron, Promoter, 3Prime Utr
12.7 years ago by Pablo ★ 1.9k
4
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1
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4.8k
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Answer: A: Joining Snpeff And Vcf
12.9 years ago by Pablo ★ 1.9k
2
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0
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5.0k
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Answer: A: Snpeff Annotation
13.0 years ago by Pablo ★ 1.9k
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2.1k
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Comment: C: Snpeff-Reannotation
13.2 years ago by Pablo ★ 1.9k
1
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2
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2.1k
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Answer: A: Snpeff-Reannotation
13.2 years ago by Pablo ★ 1.9k
113 results • Page 1 of 3
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