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Comment: Comment: losing large amount of reads when using Qiime2 vsearch joinpairs command
23 months ago by jobie1 ▴ 30
2
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2
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1.4k
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losing large amount of reads when using Qiime2 vsearch joinpairs command
16S Qiime2 amplicon joining
23 months ago by jobie1 ▴ 30
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0
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431
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why/how is unweighted unifrac a better approach to finding a biomarker than weighted unifrac?
diversity microbiome amplicon Unifrac Qiime2
2.0 years ago by jobie1 ▴ 30
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0
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270
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Finding an acceptable min/max read count in two groups samples
v4v5 amplicon 16s readcount Qiime2
2.1 years ago by jobie1 ▴ 30
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0
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856
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Comment: Comment: Finding FASTA files to use with bowtie-2-build to create a custom database for K
2.2 years ago by jobie1 ▴ 30
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4
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856
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Finding FASTA files to use with bowtie-2-build to create a custom database for Kneaddata
kneaddata metagenomics bowtie2
2.2 years ago by jobie1 ▴ 30
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1.9k
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Comment: Comment: extremely low classified reads from sequencing gut microbiome data, applying rea
2.4 years ago by jobie1 ▴ 30
5
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8
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1.9k
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extremely low classified reads from sequencing gut microbiome data, applying reads to another reference database?
SRA metagenomics WGS bracken kraken2
2.4 years ago by jobie1 ▴ 30
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3
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1.9k
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Comment: Comment: extremely low classified reads from sequencing gut microbiome data, applying rea
updated 2.4 years ago by 141k • written 2.4 years ago by ▴ 30
4
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4
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2.0k
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What Kraken2 reference database is being used in these SOPs
Kraken2 NCBI microbiome metagenomic
updated 2.4 years ago by ★ 3.2k • written 2.4 years ago by ▴ 30
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1
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2.0k
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Comment: Comment: What Kraken2 reference database is being used in these SOPs
2.4 years ago by jobie1 ▴ 30
5
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6
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2.2k
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why do i get this gnu parallel warning (Trimmomatic/Bowtie2)
BOWTIE2 Trimmomatic GNU metagenomics parallel
updated 2.4 years ago by ★ 4.4k • written 2.4 years ago by ▴ 30
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0
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1.9k
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Comment: Comment: extremely low classified reads from sequencing gut microbiome data, applying rea
2.4 years ago by jobie1 ▴ 30
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