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Comment: C: Esoteric Programming Languages
9.6 years ago by QVINTVS_FABIVS_MAXIMVS ★ 2.6k
3
votes
7
replies
6.6k
views
Reading CRAM files in pysam
python CRAM samtools pysam htslib
updated 3.2 years ago by 45k • written 9.9 years ago by ★ 2.6k
0
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0
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6.6k
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Comment: C: Reading CRAM files in pysam
9.9 years ago by QVINTVS_FABIVS_MAXIMVS ★ 2.6k
4
votes
3
replies
9.5k
views
Are XA: tagged reads == SA: tagged BWAMEM aligned reads?
bam bwa-mem samtools
updated 2.0 years ago by ▴ 140 • written 9.9 years ago by ★ 2.6k
0
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0
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6.6k
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Comment: C: Reading CRAM files in pysam
9.9 years ago by QVINTVS_FABIVS_MAXIMVS ★ 2.6k
0
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1
reply
6.6k
views
Comment: C: Reading CRAM files in pysam
9.9 years ago by QVINTVS_FABIVS_MAXIMVS ★ 2.6k
1
vote
1
reply
3.2k
views
Comment: C: Position of N nucleotides in reference genome
10.0 years ago by QVINTVS_FABIVS_MAXIMVS ★ 2.6k
7
votes
3
replies
3.2k
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Position of N nucleotides in reference genome
reference-genome nucleotide
updated 3.2 years ago by 45k • written 10.0 years ago by ★ 2.6k
1
vote
1
reply
3.4k
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Statistical Tests for Genetic Associations (Permutation)
gene permutation test statistics genetics
updated 3.2 years ago by 45k • written 10.0 years ago by ★ 2.6k
0
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1
reply
2.9k
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Comment: C: Count total base pairs in bedfile B that overlap bedfile A
10.0 years ago by QVINTVS_FABIVS_MAXIMVS ★ 2.6k
2
votes
3
replies
2.9k
views
Count total base pairs in bedfile B that overlap bedfile A
cnv bedtools
updated 3.2 years ago by 45k • written 10.0 years ago by ★ 2.6k
1
vote
0
replies
3.8k
views
Answer: Answer: Gain/Loss/LOH reporter Tool?
updated 3.2 years ago by 45k • written 10.0 years ago by ★ 2.6k
0
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1
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2.4k
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Comment: C: Genotyping CNVs from Next Generation Sequencing data
10.2 years ago by QVINTVS_FABIVS_MAXIMVS ★ 2.6k
1
vote
3
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2.4k
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Genotyping CNVs from Next Generation Sequencing data
genotyping CNV NGS
updated 10.2 years ago by 12k • written 10.2 years ago by ★ 2.6k
2
votes
3
replies
8.1k
views
increasing floating point precision in pandas
python pandas floating-point
updated 3.1 years ago by 45k • written 10.2 years ago by ★ 2.6k
0
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0
replies
8.1k
views
Comment: Comment: increasing floating point precision in pandas
updated 3.1 years ago by 45k • written 10.2 years ago by ★ 2.6k
2
votes
0
replies
17k
views
Answer: Answer: bedtools intersect mistakes
updated 3.1 years ago by 45k • written 10.2 years ago by ★ 2.6k
1
vote
0
replies
2.5k
views
Answer: A: How to can analyze the Affymetrix CytoscanHD array data?
10.2 years ago by QVINTVS_FABIVS_MAXIMVS ★ 2.6k
1
vote
0
replies
27k
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Comment: C: Variant call format (VCF) file, how to get statistics per sample?
10.2 years ago by QVINTVS_FABIVS_MAXIMVS ★ 2.6k
0
votes
1
reply
2.7k
views
Comment: Comment: Read depths from 1000G exome sequencing are almost all zero.
updated 3.1 years ago by 45k • written 10.2 years ago by ★ 2.6k
0
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0
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3.6k
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Comment: Comment: EXCAVATOR Not working
updated 3.1 years ago by 45k • written 10.2 years ago by ★ 2.6k
0
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1
reply
3.6k
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Answer: Answer: EXCAVATOR Not working
updated 3.1 years ago by 45k • written 10.2 years ago by ★ 2.6k
0
votes
1
reply
13k
views
Comment: Comment: Copy number variation plot (R package)
updated 3.1 years ago by 45k • written 10.2 years ago by ★ 2.6k
4
votes
2
replies
13k
views
Answer: A: Copy number variation plot (R package)
10.2 years ago by QVINTVS_FABIVS_MAXIMVS ★ 2.6k
6
votes
4
replies
6.0k
views
Tool: Sorting bed files with bash sort
bash bed
updated 2.6 years ago by 45k • written 10.3 years ago by ★ 2.6k
0
votes
1
reply
3.3k
views
Comment: C: Retrieving of all the sequences of a microbiome
10.3 years ago by QVINTVS_FABIVS_MAXIMVS ★ 2.6k
0
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0
replies
2.5k
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Comment: Comment: Significance of genotype frequency in SNP study
updated 3.0 years ago by 45k • written 10.3 years ago by ★ 2.6k
0
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1
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3.4k
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Comment: A: Are there any software packages available to calculate ploidy from RNA-Seq data?
10.3 years ago by QVINTVS_FABIVS_MAXIMVS ★ 2.6k
0
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0
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3.1k
views
Answer: A: Replication Of Gwas Hits From Illumina Quad Platform Using Affymetrix 6.0 Platfo
10.3 years ago by QVINTVS_FABIVS_MAXIMVS ★ 2.6k
1
vote
1
reply
8.9k
views
Comment: Comment: pysam: filtering reads based on flag
updated 3.0 years ago by 45k • written 10.3 years ago by ★ 2.6k
0
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0
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8.9k
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Comment: C: pysam: filtering reads based on flag
10.3 years ago by QVINTVS_FABIVS_MAXIMVS ★ 2.6k
1
vote
1
reply
2.4k
views
Comment: C: PLINK results interpretation
10.3 years ago by QVINTVS_FABIVS_MAXIMVS ★ 2.6k
1
vote
0
replies
5.6k
views
Comment: Comment: Exon count in ncbi
updated 3.0 years ago by 45k • written 10.3 years ago by ★ 2.6k
0
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0
replies
4.5k
views
Comment: Comment: Pull all unmapped reads from BAM file?
updated 3.0 years ago by 45k • written 10.3 years ago by ★ 2.6k
1
vote
1
reply
8.1k
views
Comment: C: htslib C API: getting reads from region
10.3 years ago by QVINTVS_FABIVS_MAXIMVS ★ 2.6k
0
votes
1
reply
4.1k
views
Comment: C: Optimizing samtools shell scripts. How to make code run faster
10.3 years ago by QVINTVS_FABIVS_MAXIMVS ★ 2.6k
3
votes
0
replies
4.5k
views
Answer: Answer: Pull all unmapped reads from BAM file?
updated 3.0 years ago by 45k • written 10.3 years ago by ★ 2.6k
9
votes
9
replies
8.1k
views
htslib C API: getting reads from region
samtools htslib C API
updated 4.4 years ago by 45k • written 10.3 years ago by ★ 2.6k
0
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1
reply
4.1k
views
Comment: C: Optimizing samtools shell scripts. How to make code run faster
10.3 years ago by QVINTVS_FABIVS_MAXIMVS ★ 2.6k
4
votes
7
replies
4.1k
views
Optimizing samtools shell scripts. How to make code run faster
samtools shell
updated 3.0 years ago by 45k • written 10.3 years ago by ★ 2.6k
0
votes
0
replies
9.3k
views
Comment: C: How to get unique mapped reads?
10.3 years ago by QVINTVS_FABIVS_MAXIMVS ★ 2.6k
2
votes
1
reply
9.3k
views
Answer: Answer: How to get unique mapped reads?
updated 2.9 years ago by 45k • written 10.3 years ago by ★ 2.6k
0
votes
1
reply
3.3k
views
Comment: Comment: samtools piping with awk/ bash commands -> Wonky things happen!!!
updated 2.9 years ago by 45k • written 10.4 years ago by ★ 2.6k
0
votes
1
reply
3.3k
views
Comment: C: samtools piping with awk/ bash commands -> Wonky things happen!!!
10.4 years ago by QVINTVS_FABIVS_MAXIMVS ★ 2.6k
11
votes
9
replies
3.3k
views
samtools piping with awk/ bash commands -> Wonky things happen!!!
bash samtools awk
updated 2.9 years ago by 45k • written 10.4 years ago by ★ 2.6k
0
votes
1
reply
3.3k
views
Comment: C: What does this mean in my read (samtools)
10.4 years ago by QVINTVS_FABIVS_MAXIMVS ★ 2.6k
3
votes
6
replies
3.3k
views
What does this mean in my read (samtools)
ngs samtools wgs
updated 2.8 years ago by 45k • written 10.4 years ago by ★ 2.6k
0
votes
0
replies
3.3k
views
Comment: Comment: What does this mean in my read (samtools)
updated 2.8 years ago by 45k • written 10.4 years ago by ★ 2.6k
0
votes
1
reply
14k
views
Comment: Comment: Split Read in Samtools
updated 2.8 years ago by 45k • written 10.4 years ago by ★ 2.6k
9
votes
11
replies
14k
views
Split Read in Samtools
samtools wgs ngs split read clipped read
updated 2.8 years ago by 45k • written 10.4 years ago by ★ 2.6k
242 results • Page 4 of 5
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