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0
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1
reply
3.9k
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Comment:
C: meta analysis of p values from deseq2 output
updated 4.4 years ago by
Ram
43k • written 8.3 years ago by
tonja.r
▴ 600
0
votes
0
replies
3.9k
views
Comment:
C: meta analysis of p values from deseq2 output
updated 4.4 years ago by
Ram
43k • written 8.3 years ago by
tonja.r
▴ 600
1
vote
0
replies
7.7k
views
Comment:
C: featureCounts, strand specificity, reversely stranded
updated 4.4 years ago by
Ram
43k • written 8.3 years ago by
tonja.r
▴ 600
0
votes
0
replies
2.8k
views
Comment:
C: encode data for RNAseq, type of library
updated 4.4 years ago by
Ram
43k • written 8.3 years ago by
tonja.r
▴ 600
0
votes
0
replies
2.0k
views
Comment:
C: how the data should look like after the normalization
updated 4.4 years ago by
Ram
43k • written 8.5 years ago by
tonja.r
▴ 600
0
votes
1
reply
4.5k
views
Comment:
C: PEER normalization after DESeq run
updated 4.4 years ago by
Ram
43k • written 8.5 years ago by
tonja.r
▴ 600
0
votes
1
reply
4.5k
views
Comment:
C: PEER normalization after DESeq run
updated 4.4 years ago by
Ram
43k • written 8.5 years ago by
tonja.r
▴ 600
0
votes
1
reply
4.5k
views
Comment:
C: PEER normalization after DESeq run
updated 4.4 years ago by
Ram
43k • written 8.5 years ago by
tonja.r
▴ 600
1
vote
1
reply
2.8k
views
Comment:
C: featureCounts of subread
updated 4.4 years ago by
Ram
43k • written 8.5 years ago by
tonja.r
▴ 600
0
votes
1
reply
7.3k
views
Comment:
C: demultiplexing with fastq having barcode and primer sequence
7.5 years ago by
tonja.r
▴ 600
0
votes
1
reply
7.3k
views
Comment:
C: demultiplexing with fastq having barcode and primer sequence
7.5 years ago by
tonja.r
▴ 600
0
votes
0
replies
7.3k
views
Comment:
C: demultiplexing with fastq having barcode and primer sequence
7.5 years ago by
tonja.r
▴ 600
0
votes
2
replies
7.3k
views
Comment:
C: demultiplexing with fastq having barcode and primer sequence
7.5 years ago by
tonja.r
▴ 600
0
votes
0
replies
3.8k
views
Comment:
C: single end reads, reverse and forward primer
7.5 years ago by
tonja.r
▴ 600
0
votes
0
replies
5.2k
views
Comment:
C: RSeQC infer_experiment.py results interpretation for cuffdiff and featureCounts
7.7 years ago by
tonja.r
▴ 600
0
votes
1
reply
12k
views
Comment:
Comment: Infer-experiment.py, is strand-specific?
updated 2.1 years ago by
Ram
43k • written 8.2 years ago by
tonja.r
▴ 600
0
votes
1
reply
12k
views
Comment:
Comment: Infer-experiment.py, is strand-specific?
updated 2.1 years ago by
Ram
43k • written 8.2 years ago by
tonja.r
▴ 600
0
votes
1
reply
12k
views
Comment:
Comment: Infer-experiment.py, is strand-specific?
updated 2.1 years ago by
Ram
43k • written 8.2 years ago by
tonja.r
▴ 600
0
votes
0
replies
6.8k
views
Comment:
C: SE reads in fr-firststrand, fr-secondstrand
8.2 years ago by
tonja.r
▴ 600
0
votes
1
reply
6.8k
views
Comment:
C: SE reads in fr-firststrand, fr-secondstrand
8.2 years ago by
tonja.r
▴ 600
0
votes
1
reply
12k
views
Comment:
Comment: Infer-experiment.py, is strand-specific?
updated 2.1 years ago by
Ram
43k • written 8.2 years ago by
tonja.r
▴ 600
0
votes
1
reply
12k
views
Comment:
Comment: Infer-experiment.py, is strand-specific?
updated 2.1 years ago by
Ram
43k • written 8.2 years ago by
tonja.r
▴ 600
0
votes
0
replies
5.2k
views
Comment:
Comment: RSeQC infer_experiment.py results interpretation for cuffdiff and featureCounts
updated 21 months ago by
Ram
43k • written 8.2 years ago by
tonja.r
▴ 600
2
votes
1
reply
12k
views
Comment:
Comment: Infer-experiment.py, is strand-specific?
updated 2.1 years ago by
Ram
43k • written 8.2 years ago by
tonja.r
▴ 600
0
votes
1
reply
2.4k
views
Comment:
C: p-value distribution of edger or deseq2
8.2 years ago by
tonja.r
▴ 600
0
votes
0
replies
2.5k
views
Comment:
C: chip-seq (histone modifications) and rna-seq data for benchmarking
8.3 years ago by
tonja.r
▴ 600
0
votes
0
replies
2.0k
views
Comment:
C: looking for chip-seq histone marks and rna-seq data
8.3 years ago by
tonja.r
▴ 600
0
votes
1
reply
1.8k
views
Comment:
C: methylation data, ratios of methylated vs unmethylated reads
8.4 years ago by
tonja.r
▴ 600
0
votes
0
replies
17k
views
Comment:
C: dispersion of a gene, what does it mean?
8.4 years ago by
tonja.r
▴ 600
0
votes
0
replies
2.0k
views
Comment:
C: how the data should look like after the normalization
8.5 years ago by
tonja.r
▴ 600
0
votes
1
reply
17k
views
Comment:
C: featureCounts strand specificity
8.5 years ago by
tonja.r
▴ 600
0
votes
2
replies
17k
views
Comment:
C: featureCounts strand specificity
8.5 years ago by
tonja.r
▴ 600
0
votes
1
reply
17k
views
Comment:
C: featureCounts strand specificity
8.5 years ago by
tonja.r
▴ 600
0
votes
1
reply
2.8k
views
Comment:
C: featureCounts of subread
8.5 years ago by
tonja.r
▴ 600
0
votes
0
replies
2.3k
views
Comment:
Comment: statistical test on count data for differential expression
updated 19 months ago by
Ram
43k • written 8.6 years ago by
tonja.r
▴ 600
0
votes
0
replies
2.3k
views
Comment:
Comment: statistical test on count data for differential expression
updated 19 months ago by
Ram
43k • written 8.6 years ago by
tonja.r
▴ 600
0
votes
1
reply
4.8k
views
Comment:
C: H3K4me3 and H3K27ac double peaks near TSS
8.6 years ago by
tonja.r
▴ 600
0
votes
0
replies
4.2k
views
Comment:
Comment: Average Width Of H3K4Me3 Peaks
updated 19 months ago by
Ram
43k • written 8.6 years ago by
tonja.r
▴ 600
0
votes
0
replies
3.4k
views
Comment:
C: cufflinks with reference annotation, FPKM for a gene
8.6 years ago by
tonja.r
▴ 600
0
votes
1
reply
2.9k
views
Comment:
Comment: cufflinks, RPKM for a gene, taking only exons
updated 19 months ago by
Ram
43k • written 8.6 years ago by
tonja.r
▴ 600
0
votes
0
replies
4.2k
views
Comment:
C: chip-seq data for histone, tag count
8.6 years ago by
tonja.r
▴ 600
0
votes
1
reply
4.2k
views
Comment:
Comment: chip-seq data for histone, tag count
updated 19 months ago by
Ram
43k • written 8.6 years ago by
tonja.r
▴ 600
0
votes
1
reply
3.7k
views
Comment:
Comment: bedtools coverageBed vs samtools mpileup, speed
updated 19 months ago by
Ram
43k • written 8.6 years ago by
tonja.r
▴ 600
0
votes
0
replies
9.3k
views
Comment:
Comment: coverage per base using samtools depth and mpileup
updated 19 months ago by
Ram
43k • written 8.6 years ago by
tonja.r
▴ 600
0
votes
0
replies
3.0k
views
Comment:
Comment: hypergeometric distribution for proximal gene enrichment
updated 18 months ago by
Ram
43k • written 8.7 years ago by
tonja.r
▴ 600
0
votes
1
reply
3.0k
views
Comment:
Comment: hypergeometric distribution for proximal gene enrichment
updated 18 months ago by
Ram
43k • written 8.7 years ago by
tonja.r
▴ 600
0
votes
0
replies
3.0k
views
Comment:
Comment: hypergeometric distribution for proximal gene enrichment
updated 18 months ago by
Ram
43k • written 8.7 years ago by
tonja.r
▴ 600
0
votes
1
reply
3.4k
views
Comment:
Comment: SNPs, genotypes, HWE in GWAS,
updated 15 months ago by
Ram
43k • written 8.9 years ago by
tonja.r
▴ 600
0
votes
1
reply
3.2k
views
Comment:
Comment: installing blat for homer on os x
updated 22 months ago by
Ram
43k • written 9.1 years ago by
tonja.r
▴ 600
0
votes
1
reply
4.3k
views
Comment:
Comment: histone mark data from roadmap epigenomics
updated 22 months ago by
Ram
43k • written 9.1 years ago by
tonja.r
▴ 600
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