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does genomics_general.py need both invariant sites and variant sites to calculate pi, FST and DXY
genomics_general
14 months ago by Maxine ▴ 50
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0
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877
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Comment: Comment: vg call is time consuming
19 months ago by Maxine ▴ 50
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2
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877
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vg call is time consuming
vg
19 months ago by Maxine ▴ 50
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1
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1.7k
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Comment: Comment: Does vg call allow fuzzy match during SV calling?
20 months ago by Maxine ▴ 50
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1
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1.7k
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Comment: Comment: Does vg call allow fuzzy match during SV calling?
20 months ago by Maxine ▴ 50
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1
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1.7k
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Comment: Comment: Does vg call allow fuzzy match during SV calling?
20 months ago by Maxine ▴ 50
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7
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1.7k
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Does vg call allow fuzzy match during SV calling?
vg
updated 20 months ago by ▴ 760 • written 20 months ago by ▴ 50
0
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0
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2.7k
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Comment: Comment: need interpretations for the vg call output
23 months ago by Maxine ▴ 50
2
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6
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2.7k
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need interpretations for the vg call output
vcf vg
23 months ago by Maxine ▴ 50
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1
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2.7k
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Comment: Comment: need interpretations for the vg call output
23 months ago by Maxine ▴ 50
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1
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2.7k
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Answer: Answer: need interpretations for the vg call output
23 months ago by Maxine ▴ 50
2
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4
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2.1k
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How to annotate function of genes from non-model organism
gene annotation
updated 2.0 years ago by ▴ 80 • written 2.0 years ago by ▴ 50
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1
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2.1k
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Comment: Comment: How to annotate function of genes from non-model organism
updated 2.0 years ago by 45k • written 2.0 years ago by ▴ 50
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0
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1.4k
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Comment: Comment: tximport error: vroom
2.1 years ago by Maxine ▴ 50
2
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3
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1.4k
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tximport error: vroom
tximport
2.1 years ago by Maxine ▴ 50
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1
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4.7k
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Comment: Comment: The number of SVs called by `vg call` is much smaller than the number of SVs in
2.2 years ago by Maxine ▴ 50
0
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1
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4.7k
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Comment: Comment: The number of SVs called by `vg call` is much smaller than the number of SVs in
2.2 years ago by Maxine ▴ 50
0
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1
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4.7k
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Comment: Comment: The number of SVs called by `vg call` is much smaller than the number of SVs in
2.2 years ago by Maxine ▴ 50
0
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0
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2.0k
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Answer: Answer: vg tools is running, but memory consumption is not happened and log files are no
2.2 years ago by Maxine ▴ 50
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1
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4.7k
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Comment: Comment: The number of SVs called by `vg call` is much smaller than the number of SVs in
2.2 years ago by Maxine ▴ 50
0
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1
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4.7k
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Comment: Comment: The number of SVs called by `vg call` is much smaller than the number of SVs in
2.2 years ago by Maxine ▴ 50
0
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1
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4.7k
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Comment: Comment: The number of SVs called by `vg call` is much smaller than the number of SVs in
2.2 years ago by Maxine ▴ 50
0
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1
reply
4.7k
views
Comment: Comment: The number of SVs called by `vg call` is much smaller than the number of SVs in
2.2 years ago by Maxine ▴ 50
0
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1
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4.7k
views
Comment: Comment: The number of SVs called by `vg call` is much smaller than the number of SVs in
2.2 years ago by Maxine ▴ 50
2
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20
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4.7k
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The number of SVs called by `vg call` is much smaller than the number of SVs in the VCF used to construct the graph
vg
2.1 years ago by Maxine ▴ 50
0
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2
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4.7k
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Comment: Comment: The number of SVs called by `vg call` is much smaller than the number of SVs in
2.2 years ago by Maxine ▴ 50
0
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0
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2.7k
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Comment: Comment: Speed up vg call ?
2.2 years ago by Maxine ▴ 50
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1
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2.7k
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Comment: Comment: Speed up vg call ?
2.2 years ago by Maxine ▴ 50
0
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1
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2.7k
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Comment: Comment: Speed up vg call ?
2.2 years ago by Maxine ▴ 50
0
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1
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2.4k
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Comment: Comment: Why some insertions are symbolic in ALT column?
2.3 years ago by Maxine ▴ 50
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0
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2.4k
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Comment: Comment: population-level stratagy of vg call
2.3 years ago by Maxine ▴ 50
5
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5
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2.4k
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population-level stratagy of vg call
vg
2.3 years ago by Maxine ▴ 50
2
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7
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2.4k
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Why some insertions are symbolic in ALT column?
vcf sniffles
updated 2.2 years ago by • 0 • written 2.4 years ago by ▴ 50
0
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1
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4.9k
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Comment: Comment: SV calling using giraffe/vg
2.3 years ago by Maxine ▴ 50
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1
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2.3k
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Comment: Comment: vg map time consuming
2.3 years ago by Maxine ▴ 50
0
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1
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2.4k
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Comment: Comment: population-level stratagy of vg call
2.3 years ago by Maxine ▴ 50
0
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0
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2.3k
views
Comment: Comment: vg map time consuming
2.3 years ago by Maxine ▴ 50
0
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1
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2.3k
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Comment: Comment: vg map time consuming
2.3 years ago by Maxine ▴ 50
0
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1
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2.3k
views
Comment: Comment: vg map time consuming
2.3 years ago by Maxine ▴ 50
4
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9
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2.3k
views
vg map time consuming
vg
updated 2.3 years ago by ▴ 550 • written 2.3 years ago by ▴ 50
3
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5
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1.9k
views
unable to find most of SVs in constructed graph.vg
vg
updated 2.3 years ago by ▴ 550 • written 2.3 years ago by ▴ 50
0
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0
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1.9k
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Comment: Comment: unable to find most of SVs in constructed graph.vg
2.3 years ago by Maxine ▴ 50
0
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0
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1.9k
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Comment: Comment: unable to find most of SVs in constructed graph.vg
2.3 years ago by Maxine ▴ 50
0
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0
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2.4k
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Comment: Comment: Why some insertions are symbolic in ALT column?
2.4 years ago by Maxine ▴ 50
0
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0
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2.4k
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Comment: Comment: Why some insertions are symbolic in ALT column?
2.4 years ago by Maxine ▴ 50
0
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0
replies
597
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how to get the nucleotide squence behind a symbolic ALT in VCF
SV vcf sniffles
2.6 years ago by Maxine ▴ 50
0
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0
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905
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Comment: Comment: bayescan q values are generally higher than 0.05
3.0 years ago by Maxine ▴ 50
0
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1
reply
905
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bayescan q values are generally higher than 0.05
statistics bayescan
3.0 years ago by Maxine ▴ 50
0
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0
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1.1k
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Comment: Comment: Is it possible to run bayescan with a splitted chromosome?
3.0 years ago by Maxine ▴ 50
0
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1
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2.3k
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Comment: Comment: how do you know an SV is located in exton, intron or Intergenic region
3.1 years ago by Maxine ▴ 50
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