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Answer: Answer: Consensus peaksets in DiffBind - conceptual questinos
4 months ago by Rory Stark ★ 2.0k
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1
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821
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Answer: Answer: Multi-factor designs in DiffBind
4 months ago by Rory Stark ★ 2.0k
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0
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330
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Answer: Answer: CHIPSEQ Analysis , DiffBind Parameters
4 months ago by Rory Stark ★ 2.0k
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1
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495
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Answer: Answer: Diffbind low p-value but high FDR
5 months ago by Rory Stark ★ 2.0k
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1
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711
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Answer: Answer: The bam file used for DiffBind?
9 months ago by Rory Stark ★ 2.0k
2
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1
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603
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Answer: Answer: How to compare peak profiles for a subset of ChIPseq genes
9 months ago by Rory Stark ★ 2.0k
2
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1
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5.0k
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Answer: Answer: Help with DiffBind Generating report-based DBA object... Error: No valid contras
9 months ago by Rory Stark ★ 2.0k
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0
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822
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Answer: Answer: How to interpret chipseq profile plot
10 months ago by Rory Stark ★ 2.0k
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0
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490
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Answer: Answer: Profile Plot looks strange
10 months ago by Rory Stark ★ 2.0k
2
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0
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782
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Answer: Answer: Sample sheet file for DiffBind
10 months ago by Rory Stark ★ 2.0k
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1
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2.6k
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Answer: Answer: Interpret plots from DiffBind
10 months ago by Rory Stark ★ 2.0k
2
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1
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1.1k
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Answer: Answer: Diff Bind Questions
11 months ago by Rory Stark ★ 2.0k
2
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1
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874
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Answer: Answer: CHiP-Seq Questions
11 months ago by Rory Stark ★ 2.0k
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0
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776
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Answer: Answer: Diffbind not calling sites as differentially bound
11 months ago by Rory Stark ★ 2.0k
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0
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666
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Answer: Answer: Positive and negative value fold value in ATAC seq using DiffBind
12 months ago by Rory Stark ★ 2.0k
2
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1
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2.0k
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Answer: Answer: Diffbind dba.count doesn't give FRiP score
13 months ago by Rory Stark ★ 2.0k
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1
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2.0k
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Answer: Answer: Diffbind dba.count doesn't give FRiP score
13 months ago by Rory Stark ★ 2.0k
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1
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885
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Answer: Answer: Diffbind: how to get raw read counts and normalized read counts
13 months ago by Rory Stark ★ 2.0k
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0
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2.0k
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Answer: Answer: DiffBind reports no significant differentially enriched peaks
14 months ago by Rory Stark ★ 2.0k
2
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0
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1.0k
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Answer: Answer: Chip-seq Analysis
14 months ago by Rory Stark ★ 2.0k
1
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1
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692
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Answer: Answer: Strange results from Diffbind-Deseq2 differential peak binding of cfChip-seq wit
updated 15 months ago by 43k • written 15 months ago by ★ 2.0k
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880
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Answer: Answer: Pipeline for quantitative ATAC-seq
15 months ago by Rory Stark ★ 2.0k
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1.7k
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Answer: Answer: DiffBind error: No contrasts added. There must be at least two sample groups wit
16 months ago by Rory Stark ★ 2.0k
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0
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1.1k
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Answer: Answer: RiP RLE normalisation using spike-in peaks in DiffBind for ChIP-seq
16 months ago by Rory Stark ★ 2.0k
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1
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1.1k
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Answer: Answer: Diffbind raw read counts
18 months ago by Rory Stark ★ 2.0k
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1
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1.0k
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Answer: Answer: How to extract binding affinity matrix in Diffbind
19 months ago by Rory Stark ★ 2.0k
2
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0
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4.2k
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Answer: Answer: ChIPQC BiocParallel errors
21 months ago by Rory Stark ★ 2.0k
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0
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2.7k
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Answer: Answer: DiffBind dba.count() BiocParallel error
21 months ago by Rory Stark ★ 2.0k
0
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0
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553
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Answer: Answer: ChIPQC read depth doesn't match BAM files
21 months ago by Rory Stark ★ 2.0k
2
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1
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1.3k
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Answer: Answer: Diffbind with <3 reps?
23 months ago by Rory Stark ★ 2.0k
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0
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2.8k
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Answer: Answer: Error in DiffBind. Please HELP!
23 months ago by Rory Stark ★ 2.0k
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1
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2.1k
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Answer: Answer: How to make a read count matrix from multiple bed files generated by ROSE
23 months ago by Rory Stark ★ 2.0k
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0
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1.2k
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Answer: Answer: DiffBind - Comparing normalization/background methods - how to create a heatmap
24 months ago by Rory Stark ★ 2.0k
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0
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725
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Answer: Answer: DiffBind using static set of peaks for all samples
24 months ago by Rory Stark ★ 2.0k
2
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0
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645
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Answer: Answer: Why does DiffBind use the count of reads that fall within peaks?
2.1 years ago by Rory Stark ★ 2.0k
3
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1
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1.7k
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Answer: Answer: ATAC DiffBind: use peak or summit file?
2.1 years ago by Rory Stark ★ 2.0k
1
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1
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3.0k
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Answer: Answer: DiffBind missing peaks and FRiP
2.2 years ago by Rory Stark ★ 2.0k
1
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1
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831
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Answer: Answer: help for dba.count settings for RNAPII-ChIP using GRanges peakset
2.2 years ago by Rory Stark ★ 2.0k
3
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1
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1.5k
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Answer: Answer: Problems with dba.analyze in DiffBind - are blacklists/greylists required to obt
2.2 years ago by Rory Stark ★ 2.0k
2
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1
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998
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Answer: Answer: DiffBind normalization returned NULL
2.2 years ago by Rory Stark ★ 2.0k
3
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2
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2.4k
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Answer: Answer: Error with dba.count
2.2 years ago by Rory Stark ★ 2.0k
0
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0
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705
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Answer: Answer: How does diffbind extract the original coordinates of each difference peak
2.3 years ago by Rory Stark ★ 2.0k
0
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1
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1.0k
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Answer: Answer: diffbind dba.report error
2.3 years ago by Rory Stark ★ 2.0k
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0
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617
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Answer: Answer: standard deviation in DiffBind Consensus peaks
2.3 years ago by Rory Stark ★ 2.0k
1
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0
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1.1k
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Answer: Answer: DiffBind spike-in normalisation with varying amounts of spike-in chromatin
2.4 years ago by Rory Stark ★ 2.0k
3
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0
replies
3.7k
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Answer: Answer: why are all DiffBind tutorial's ATAC-seq peak intervals 400 bp for all intervals
2.4 years ago by Rory Stark ★ 2.0k
0
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0
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1.1k
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Answer: Answer: dba.count reduces binding matrix, why?
2.6 years ago by Rory Stark ★ 2.0k
0
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1
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1.1k
views
Answer: Answer: RPKM on TSS using DiffBind
2.7 years ago by Rory Stark ★ 2.0k
3
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1
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1.2k
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Answer: Answer: DiffBind - low number of significant peaks for one contrast
2.7 years ago by Rory Stark ★ 2.0k
1
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0
replies
1.9k
views
Answer: Answer: Diffbind adding my own consensus peaks
2.7 years ago by Rory Stark ★ 2.0k
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