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Comment: Comment: How to interpret DEXseq results in therms of significance
12 hours ago by Sara ▴ 30
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How should I handle read counts derived from SGSeq when I want to build DEXSeqDataSet object
DEXSeq DEXSeqDataSet SGSeq
7 days ago by Sara ▴ 30
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3
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678
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pheatmap
pheatmap heatmap differential-expression RNA-seq
updated 7 months ago by ★ 2.4k • written 7 months ago by ▴ 30
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678
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Comment: Comment: pheatmap
7 months ago by Sara ▴ 30
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Comment: Comment: How to get normalized counts corrected for variables in the design matrix of DES
8 months ago by Sara ▴ 30
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3
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How to get normalized counts corrected for variables in the design matrix of DESeq2 as an input for WGCNA
WGCNA vst DESeq2
8 months ago by Sara ▴ 30
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315
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minModuleSize WGCNA
WGCNA minModuleSize
9 months ago by Sara ▴ 30
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956
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Comment: Comment: Analize RNA-seq data using Hisat2
10 months ago by Sara ▴ 30
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2.2k
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Comment: Comment: samtools collate
10 months ago by Sara ▴ 30
6
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16
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2.2k
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samtools collate
samtools
10 months ago by Sara ▴ 30
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2
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2.2k
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Answer: Answer: samtools collate
10 months ago by Sara ▴ 30
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2.2k
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Comment: Comment: samtools collate
10 months ago by Sara ▴ 30
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2.2k
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Comment: Comment: samtools collate
10 months ago by Sara ▴ 30
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2.2k
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Comment: Comment: samtools collate
10 months ago by Sara ▴ 30
0
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1
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2.2k
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Comment: Comment: samtools collate
10 months ago by Sara ▴ 30
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1.2k
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Comment: Comment: Losing a lot of significant genes after removing outliers. Having cell type comp
10 months ago by Sara ▴ 30
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5
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1.2k
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Losing a lot of significant genes after removing outliers. Having cell type composition as covariates
DESeq2 RNA-seq
10 months ago by Sara ▴ 30
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1.2k
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Comment: Comment: Losing a lot of significant genes after removing outliers. Having cell type comp
10 months ago by Sara ▴ 30
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3
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920
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extreme high log2FoldChange in DESeq2 result
log2FoldChange DESeq2 RNA-seq DGEA
updated 10 months ago by 4.2k • written 10 months ago by ▴ 30
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Comment: Comment: Tool To Find Out If Fastq Is In Sanger Or Phred64 Encoding?
11 months ago by Sara ▴ 30
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1
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655
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Differentially expressed gene with high log2foldchange by DESeq2; but not meaningful at the individual level
DESeq2 RNA-seq DGEA
10 months ago by Sara ▴ 30
8
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6
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993
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No differentially expressed genes after multiple testing correction in mice
edgeR DESeq2 Limma mouse RNA-seq
updated 12 months ago by 11k • written 12 months ago by ▴ 30
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993
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Comment: Comment: No differentially expressed genes after multiple testing correction in mice
12 months ago by Sara ▴ 30
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2
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993
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Comment: Comment: No differentially expressed genes after multiple testing correction in mice
12 months ago by Sara ▴ 30
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