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Answer: Answer: Integrate several multiome objects
4 days ago by LChart 4.2k
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494
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Answer: Answer: Integrate several multiome objects
9 days ago by LChart 4.2k
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372
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Answer: Answer: Is it Necessary to Use Raw Data for SCTransform When Regressing Out Cell Cycle G
11 days ago by LChart 4.2k
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329
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Answer: Answer: Best Way to Assemble DNA Sequencing Data
12 days ago by LChart 4.2k
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199
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Answer: Answer: Using Ensembl Gene IDs for Ontology Analysis
12 days ago by LChart 4.2k
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1.3k
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Answer: Answer: Is "training", fine tuning, or overfitting on "external independent validation d
24 days ago by LChart 4.2k
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528
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Answer: Answer: If TPM is not comparable across cohorts, can it be used as the input for ML mode
26 days ago by LChart 4.2k
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290
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Answer: Answer: Clarification on WGCNA Module-Trait Correlations, Interpretation, and Functional
4 weeks ago by LChart 4.2k
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332
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Answer: Answer: How to use Diffbind to quantify signal in a drt of custom peaks
4 weeks ago by LChart 4.2k
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277
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Answer: Answer: When should I normalize and subset adata objects in scanpy?
4 weeks ago by LChart 4.2k
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253
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Answer: Answer: Background mutation rate from WGS
4 weeks ago by LChart 4.2k
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516
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Answer: Answer: which bed file should be used for deeptools computeMatrix
4 weeks ago by LChart 4.2k
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386
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Answer: Answer: How to perform reciprocal best hit (RBH) when there are multiple versions of a p
4 weeks ago by LChart 4.2k
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242
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Answer: Answer: Inlfated QQ plot GWAS
4 weeks ago by LChart 4.2k
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526
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Answer: Answer: DEGs vs WGCNA: What am I really looking at?
5 weeks ago by LChart 4.2k
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246
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Answer: Answer: PCA Genotyping rate 1000genome and own data
5 weeks ago by LChart 4.2k
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300
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Answer: Answer: eQTL analysis for the same population in different status
5 weeks ago by LChart 4.2k
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497
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Answer: Answer: How to check if all read names are paired properly in paired end fastq.gz files?
6 weeks ago by LChart 4.2k
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239
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Answer: Answer: How to choose cells that co-express several genes with scanpy?
6 weeks ago by LChart 4.2k
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406
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Answer: Answer: Selecting top signature score from signatures with different distributions
6 weeks ago by LChart 4.2k
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189
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Answer: Answer: How to download the mutational signatures for TCGA?
6 weeks ago by LChart 4.2k
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538
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Answer: Answer: The Biostar Herald for Monday, July 22, 2024
6 weeks ago by LChart 4.2k
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320
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Answer: Answer: The Biostar Herald for Wednesday, May 29, 2024
3 months ago by LChart 4.2k
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467
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Answer: Answer: Allele count of 2 for homoplasmic MT variants in VCF
3 months ago by LChart 4.2k
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248
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Answer: Answer: Seeking Guidance on Identifying Mutations in DARs from ATAC Data in Cancer Genom
4 months ago by LChart 4.2k
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477
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Answer: Answer: Where to get the following bed file?
4 months ago by LChart 4.2k
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921
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Answer: Answer: Post-imputation plot
4 months ago by LChart 4.2k
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921
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Answer: Answer: Post-imputation plot
4 months ago by LChart 4.2k
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430
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Answer: Answer: Inconsistency in SNP detection pipelines for multi-sample analysis
4 months ago by LChart 4.2k
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997
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Answer: Answer: DEG analysis of RNA-seq data across multiple tissues and two conditions
4 months ago by LChart 4.2k
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408
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Answer: Answer: Getting marker genes for cell types
4 months ago by LChart 4.2k
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511
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Answer: Answer: Using adonis to include a random effect
4 months ago by LChart 4.2k
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715
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Answer: Answer: how to get the variance explained by the independent variable from multivariate
4 months ago by LChart 4.2k
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715
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Answer: Answer: how to get the variance explained by the independent variable from multivariate
4 months ago by LChart 4.2k
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513
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Answer: Answer: Why is DESeq2 normalization making my top feature have identical values across s
5 months ago by LChart 4.2k
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504
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Answer: Answer: I am unsure why my files are not being accepted in bedtools jaccard, any tips?
5 months ago by LChart 4.2k
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736
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Answer: Answer: Selection criteria for nanobody
5 months ago by LChart 4.2k
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544
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Answer: Answer: cell type adjustment - how many cell types to include?
5 months ago by LChart 4.2k
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416
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Answer: Answer: two channel detection in SNP-chip
5 months ago by LChart 4.2k
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760
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Answer: Answer: Beagle Phasing and Imputation
5 months ago by LChart 4.2k
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316
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Answer: Answer: basal gene expression level
5 months ago by LChart 4.2k
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859
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Answer: Answer: How to corrected test statistics based on the LDSC intercept?
5 months ago by LChart 4.2k
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422
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Answer: Answer: Fold change vs signal p-value in ENCODE ATAC-seq
5 months ago by LChart 4.2k
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716
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Answer: Answer: VCF file not being indexed, decided to sort could not sort
5 months ago by LChart 4.2k
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2
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762
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Answer: Answer: java version compatible with GATK 3.2.2
6 months ago by LChart 4.2k
2
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1
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463
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Answer: Answer: Calculation variant frequencies for copy number events for a cohort
6 months ago by LChart 4.2k
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0
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362
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Answer: Answer: convert and merge somatic vcf file to plink format
6 months ago by LChart 4.2k
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655
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Answer: Answer: What are the best HW p-value & MAF cutoffs based on my study ?
6 months ago by LChart 4.2k
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1.2k
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Answer: Answer: Help with the new nomenclature of multi-nucleotide variants
6 months ago by LChart 4.2k
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0
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395
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Answer: Answer: DESeq and SVA for batch effect
6 months ago by LChart 4.2k
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