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Answer: Answer: Inconsistency in SNP detection pipelines for multi-sample analysis
8 days ago by LChart 3.9k
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622
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Answer: Answer: DEG analysis of RNA-seq data across multiple tissues and two conditions
8 days ago by LChart 3.9k
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229
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Answer: Answer: Getting marker genes for cell types
10 days ago by LChart 3.9k
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199
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Answer: Answer: Using adonis to include a random effect
10 days ago by LChart 3.9k
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442
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Answer: Answer: how to get the variance explained by the independent variable from multivariate
10 days ago by LChart 3.9k
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442
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Answer: Answer: how to get the variance explained by the independent variable from multivariate
11 days ago by LChart 3.9k
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319
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Answer: Answer: Why is DESeq2 normalization making my top feature have identical values across s
15 days ago by LChart 3.9k
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299
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Answer: Answer: I am unsure why my files are not being accepted in bedtools jaccard, any tips?
24 days ago by LChart 3.9k
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476
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Answer: Answer: Selection criteria for nanobody
24 days ago by LChart 3.9k
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369
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Answer: Answer: cell type adjustment - how many cell types to include?
26 days ago by LChart 3.9k
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294
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Answer: Answer: two channel detection in SNP-chip
4 weeks ago by LChart 3.9k
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305
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Answer: Answer: Beagle Phasing and Imputation
5 weeks ago by LChart 3.9k
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200
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Answer: Answer: basal gene expression level
5 weeks ago by LChart 3.9k
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575
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Answer: Answer: How to corrected test statistics based on the LDSC intercept?
5 weeks ago by LChart 3.9k
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252
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Answer: Answer: Fold change vs signal p-value in ENCODE ATAC-seq
5 weeks ago by LChart 3.9k
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456
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Answer: Answer: VCF file not being indexed, decided to sort could not sort
5 weeks ago by LChart 3.9k
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2
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431
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Answer: Answer: java version compatible with GATK 3.2.2
6 weeks ago by LChart 3.9k
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298
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Answer: Answer: Calculation variant frequencies for copy number events for a cohort
6 weeks ago by LChart 3.9k
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222
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Answer: Answer: convert and merge somatic vcf file to plink format
6 weeks ago by LChart 3.9k
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471
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Answer: Answer: What are the best HW p-value & MAF cutoffs based on my study ?
6 weeks ago by LChart 3.9k
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858
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Answer: Answer: Help with the new nomenclature of multi-nucleotide variants
7 weeks ago by LChart 3.9k
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297
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Answer: Answer: DESeq and SVA for batch effect
7 weeks ago by LChart 3.9k
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270
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Answer: Answer: How is it possible to differentiate CG or AT heterozygous in Illumina Infinium G
7 weeks ago by LChart 3.9k
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311
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Answer: Answer: no permission to install to directory
7 weeks ago by LChart 3.9k
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365
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Answer: Answer: Estimate cell label fitness in a clustering
7 weeks ago by LChart 3.9k
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757
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Answer: Answer: You have 3 days of zero obligations and expansive resources. What are you buildi
7 weeks ago by LChart 3.9k
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308
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Answer: Answer: WGCNA, correlation with trait data from different individuals
7 weeks ago by LChart 3.9k
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371
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Answer: Answer: perplexed regarding the process of gene expression normalision
8 weeks ago by LChart 3.9k
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414
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Answer: Answer: Question about the AMRFinderPlus and CARD tools
9 weeks ago by LChart 3.9k
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2.3k
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Answer: Answer: how to install conda bcftools +fill-tags plugin ?
9 weeks ago by LChart 3.9k
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533
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Answer: Answer: How to find genomic locations of SNP probes in EPIC chips
3 months ago by LChart 3.9k
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2
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601
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Answer: Answer: both log2 and log2fc giving a completely huge difference of a gene in subpopulat
3 months ago by LChart 3.9k
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0
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284
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Answer: Answer: eQTL analysis using GWAS summary statistics only
3 months ago by LChart 3.9k
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490
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Answer: Answer: Tracks of single cell data in a heatmap form
3 months ago by LChart 3.9k
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827
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Answer: Answer: Can LASSO be applied after converting and merging different RNAseq datasets into
3 months ago by LChart 3.9k
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0
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321
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Answer: Answer: Account for know genetic variance in transgenic animal models during RNA-seq ana
6 months ago by LChart 3.9k
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852
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Answer: Answer: Calculating p-value and adjusted p-value for pre-normalized microarray data with
6 months ago by LChart 3.9k
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1
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695
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Answer: Answer: how to convert beta effect size of SNP to a statistical value to be compared acr
6 months ago by LChart 3.9k
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1
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2.9k
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Answer: Answer: Merging multiple samples in Seurat
6 months ago by LChart 3.9k
4
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2
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2.4k
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Answer: Answer: Using bcftools to find unique alt homozygous sites
6 months ago by LChart 3.9k
2
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1
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641
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Answer: Answer: Why my GWAS p-value QQ-plot is far above diagonal
6 months ago by LChart 3.9k
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465
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Answer: Answer: I need help with univariate logistic regression in a set of microarray data
6 months ago by LChart 3.9k
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1
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478
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Answer: Answer: Generating a 3D model from 2D slices of a nucleus
6 months ago by LChart 3.9k
2
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1
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663
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Answer: Answer: Subclustering of intergated cells from scRNA-seq data
updated 6 months ago by 43k • written 6 months ago by 3.9k
1
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0
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557
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Answer: Answer: Lower alignment rate when using collapsed reads
7 months ago by LChart 3.9k
3
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0
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536
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Answer: Answer: Unable to build applet in DNAnexus, .jar file not found
7 months ago by LChart 3.9k
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1
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1.4k
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Answer: Answer: geom_signif() uses t-test to compare between more than 3 groups... Isn't this wr
7 months ago by LChart 3.9k
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0
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1.4k
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Answer: Answer: scRNAseq Differential expression analysis
updated 7 months ago by 43k • written 7 months ago by 3.9k
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1.2k
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Answer: Answer: Highly inflated p-values in GWAS by regenie
7 months ago by LChart 3.9k
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505
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Answer: Answer: how to evaluate SNPs that are regulating same gene expression across multiple ti
7 months ago by LChart 3.9k
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