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Answer: Answer: scRNAseq Differential expression analysis
updated 7 months ago by 43k • written 7 months ago by 3.9k
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1.2k
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Answer: Answer: Highly inflated p-values in GWAS by regenie
7 months ago by LChart 3.9k
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1
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520
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Answer: Answer: how to evaluate SNPs that are regulating same gene expression across multiple ti
7 months ago by LChart 3.9k
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1.5k
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Answer: Answer: Inflated GWAS test statistic after merging multiple batches of genotype dataset
7 months ago by LChart 3.9k
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752
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Answer: Answer: Is a PON necessary for tumor-normal matched Mutect2?
7 months ago by LChart 3.9k
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555
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Answer: Answer: Overlapping cluster/annotation
7 months ago by LChart 3.9k
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1.4k
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Answer: Answer: How to distinguish between normal and malignant epithelial cells based on CNV?
8 months ago by LChart 3.9k
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943
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Answer: Answer: LD score table for East Asians used for BOLT-LMM
8 months ago by LChart 3.9k
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860
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Answer: Answer: BedGraph to bigwig inside Pipe?
8 months ago by LChart 3.9k
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1.4k
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Answer: Answer: PCA proteomic DEP
8 months ago by LChart 3.9k
2
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1
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638
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Answer: Answer: Adding a continuous "wrap around" scale to heat map
updated 8 months ago by 43k • written 8 months ago by 3.9k
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546
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Answer: Answer: how to combine multiple Cellranger count results from a single library
8 months ago by LChart 3.9k
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502
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Answer: Answer: Can retrogenes keep their introns?
9 months ago by LChart 3.9k
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689
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Answer: Answer: Unintended behaviour when trying to remove gene version from ENSG
9 months ago by LChart 3.9k
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974
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Answer: Answer: How to perfrom a statistical test on a 3-way Venn Diagram
9 months ago by LChart 3.9k
2
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1
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759
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Answer: Answer: fisher's method for p-value combination in meta-analysis
9 months ago by LChart 3.9k
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977
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Answer: Answer: Trust in BQSR for AVITI
9 months ago by LChart 3.9k
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649
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Answer: Answer: How to salvage incomplete PLINK .bed files?
10 months ago by LChart 3.9k
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614
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Answer: Answer: Batch Effect Removal on non-Linearly independent samples
10 months ago by LChart 3.9k
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456
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Answer: Answer: Polygenic Risk Score Methods
10 months ago by LChart 3.9k
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1
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638
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Answer: Answer: GSEA and enrichment analysis of sequence data
10 months ago by LChart 3.9k
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1
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799
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Answer: Answer: Help searching homologs in a genome
10 months ago by LChart 3.9k
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1.1k
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Answer: Answer: Analysis of a batch-normalized expression dataset
10 months ago by LChart 3.9k
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1.0k
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Answer: Answer: SNP analysis with an assembly
10 months ago by LChart 3.9k
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1
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835
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Answer: Answer: Other independent methods or ways to confirm potential candidate genes observed
10 months ago by LChart 3.9k
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1
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1.4k
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Answer: Answer: How do I run DE for TPM values (not CPM)?
11 months ago by LChart 3.9k
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2
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1.2k
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Answer: Answer: Why some insertions are symbolic in ALT column?
11 months ago by LChart 3.9k
7
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1
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4.2k
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Answer: Answer: The .vcf format: is there a file format better suited for the era of pangenomics
11 months ago by LChart 3.9k
2
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1
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1.1k
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Answer: Answer: calculate p value and associated z score for snp-gene pair
11 months ago by LChart 3.9k
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0
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733
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Answer: Answer: Filtering mitochondrial reads from ATAC-Seq aligned reads- what to do with reads
11 months ago by LChart 3.9k
1
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0
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516
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Answer: Answer: Network cross-validation
11 months ago by LChart 3.9k
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0
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722
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Answer: Answer: Correcting for continuous covariates before WGCNA
11 months ago by LChart 3.9k
1
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635
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Answer: Answer: WGCNA module-trait correlation heatmap has horizontal streaks -- how to interpre
11 months ago by LChart 3.9k
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2.6k
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Answer: Answer: How to make a volcano plot including all features in a Seurat Object?
12 months ago by LChart 3.9k
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1
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1.1k
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Answer: Answer: t-test to check if the cancer samples are significantly different than the norma
12 months ago by LChart 3.9k
2
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0
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565
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Answer: Answer: Question: Why residuals can be used as new input in bioinformatic analysis?
12 months ago by LChart 3.9k
2
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2
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1.3k
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Answer: Answer: Help speeding up C++ algorithm to assign elemental composition to single m/z (=m
12 months ago by LChart 3.9k
1
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2
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1.5k
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Answer: Answer: Transformation of Log2FC to average logFC
12 months ago by LChart 3.9k
1
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1
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865
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Answer: Answer: ANOVA or linear regression
12 months ago by LChart 3.9k
2
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0
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1.7k
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Answer: Answer: BD Rhapsody software - single cell seq
12 months ago by LChart 3.9k
8
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1
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1.0k
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Answer: Answer: Wald's test in DESeq2
12 months ago by LChart 3.9k
1
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1
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660
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Answer: Answer: SKAT vs SIMES methods
12 months ago by LChart 3.9k
1
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1
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980
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Answer: Answer: How to "guess" the transformation based on already-transformed, "normalized coun
13 months ago by LChart 3.9k
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1
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587
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Answer: Answer: how to deal with "The number of covariates exceeds the number of samples" on mat
13 months ago by LChart 3.9k
1
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0
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484
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Answer: Answer: Diference between Co-expressed gene-set enrichment analysis (COGENA) and gene-se
13 months ago by LChart 3.9k
3
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0
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754
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Answer: Answer: Length bias is resequenced DNA GO analysis
13 months ago by LChart 3.9k
2
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1
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652
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Answer: Answer: remove rRNA reads before DE analysis?
13 months ago by LChart 3.9k
2
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1
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1.0k
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Answer: Answer: Is it possible to do DGE analysis using log 2 normalized data with EdgeR ?
13 months ago by LChart 3.9k
2
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854
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Answer: Answer: Using STAR for RNA seq-alignment.
13 months ago by LChart 3.9k
2
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0
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1.1k
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Answer: Answer: Active enhancers for mm39
13 months ago by LChart 3.9k
223 results • Page 2 of 5
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