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questions
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244
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STAR total splices (in Log.final) vs collapsed splice junctions (in SJ.out.tab)
STAR
6 months ago by
tnminh89
▴ 10
0
votes
2
replies
836
views
Corrupted sam file from bwa. [W::sam_parse1] mapped query cannot have zero coordinate; treated as unmapped
samtools
bwa
updated 11 months ago by
jkbonfield
★ 1.3k • written 11 months ago by
tnminh89
▴ 10
0
votes
0
replies
349
views
bowtie2 doesn't align reads concordantly within the distance given
bowtie2
12 months ago by
tnminh89
▴ 10
2
votes
4
replies
1.3k
views
bedtools intersect zero output
bedtools
biomart
updated 16 months ago by
Ram
44k • written 19 months ago by
tnminh89
▴ 10
1
vote
3
replies
1.6k
views
samtools index: Numerical result out of range for both .bai and .csi
samtools
updated 16 months ago by
Ram
44k • written 23 months ago by
tnminh89
▴ 10
1
vote
2
replies
828
views
bedtools flank error for negative strand
bedtools
bash
updated 16 months ago by
Ram
44k • written 2.2 years ago by
tnminh89
▴ 10
2
votes
7
replies
1.2k
views
inconsistent bedtools error
bedtools
bash
updated 16 months ago by
Ram
44k • written 2.2 years ago by
tnminh89
▴ 10
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