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comments
1
vote
1
reply
5.9k
views
Comment:
C: Salmon (error: SAM file and fasta file have different transcript length)
7.1 years ago by
Rob
7.2k
0
votes
1
reply
5.9k
views
Answer:
A: Salmon (error: SAM file and fasta file have different transcript length)
7.1 years ago by
Rob
7.2k
1
vote
1
reply
3.3k
views
Comment:
C: Interpretation of Salmon quat.sf result
7.1 years ago by
Rob
7.2k
6
votes
0
replies
4.5k
views
Answer:
A: RNA-seq: differentially expressed genes without genome reference
updated 7.1 years ago by
Ram
45k • written 9.7 years ago by
Rob
7.2k
0
votes
1
reply
7.1k
views
Comment:
C: Poor correlation of read count values from STAR and Kallisto
updated 7.1 years ago by
Ram
45k • written 9.7 years ago by
Rob
7.2k
0
votes
1
reply
5.1k
views
Comment:
C: Maximum size limit for indexing genome with bowtie2 with large index option
7.1 years ago by
Rob
7.2k
0
votes
1
reply
5.1k
views
Comment:
C: Maximum size limit for indexing genome with bowtie2 with large index option
7.1 years ago by
Rob
7.2k
4
votes
1
reply
2.3k
views
Answer:
A: Will Kallisto or Salmon perform streaming alignment from the Sequence Read Archi
7.1 years ago by
Rob
7.2k
1
vote
0
replies
5.6k
views
Comment:
C: Salmon Quantification for RNA-seq Read Pairs with Different Lengths
7.1 years ago by
Rob
7.2k
4
votes
1
reply
5.6k
views
Answer:
A: Salmon Quantification for RNA-seq Read Pairs with Different Lengths
7.1 years ago by
Rob
7.2k
0
votes
0
replies
5.4k
views
Comment:
C: Salmon quantification vs HTSeq count quantification
7.2 years ago by
Rob
7.2k
6
votes
1
reply
5.4k
views
Answer:
A: Salmon quantification vs HTSeq count quantification
7.2 years ago by
Rob
7.2k
0
votes
0
replies
2.0k
views
Comment:
C: Salmon Algorithm Binary Search
7.2 years ago by
Rob
7.2k
3
votes
1
reply
2.0k
views
Answer:
A: Salmon Algorithm Binary Search
7.2 years ago by
Rob
7.2k
2
votes
1
reply
4.1k
views
Comment:
C: Stranded RNA-seq data visualization in UCSC
7.2 years ago by
Rob
7.2k
3
votes
1
reply
4.1k
views
Answer:
A: Stranded RNA-seq data visualization in UCSC
7.2 years ago by
Rob
7.2k
0
votes
0
replies
2.0k
views
Comment:
C: Conflict of abundances on different taxonomic levels using centrifuge
7.2 years ago by
Rob
7.2k
2
votes
1
reply
2.0k
views
Answer:
A: Conflict of abundances on different taxonomic levels using centrifuge
7.2 years ago by
Rob
7.2k
0
votes
0
replies
11k
views
Comment:
C: Mapping vs Quasi-Mapping
7.2 years ago by
Rob
7.2k
3
votes
0
replies
11k
views
Comment:
C: Mapping vs Quasi-Mapping
7.2 years ago by
Rob
7.2k
0
votes
0
replies
1.4k
views
Answer:
A: Bayesian algorithm / HISAT & STAR
7.2 years ago by
Rob
7.2k
7
votes
1
reply
11k
views
Comment:
C: Mapping vs Quasi-Mapping
7.2 years ago by
Rob
7.2k
16
votes
1
reply
11k
views
Answer:
C: Mapping vs Quasi-Mapping
7.2 years ago by
Rob
7.2k
4
votes
1
reply
6.8k
views
Answer:
A: Big differences between mappings computed by Salmon and quantification
7.3 years ago by
Rob
7.2k
0
votes
1
reply
1.7k
views
Comment:
C: Compacted de-bruijn graph
7.4 years ago by
Rob
7.2k
5
votes
1
reply
14k
views
Answer:
A: CDS vs cDNA vs transcript for mapping RNA-Seq reads
7.5 years ago by
Rob
7.2k
2
votes
2
replies
2.9k
views
Answer:
A: Library type warning in Salmon
7.6 years ago by
Rob
7.2k
4
votes
3
replies
4.6k
views
Answer:
A: Number of threads in BWA
7.6 years ago by
Rob
7.2k
1
vote
0
replies
3.3k
views
Comment:
C: How to find novel isoforms in RNA-Seq Data
7.7 years ago by
Rob
7.2k
0
votes
0
replies
2.4k
views
Answer:
A: Regarding GC correction in sequencing data
7.9 years ago by
Rob
7.2k
1
vote
1
reply
1.7k
views
Answer:
A: Hierarchical mapping of RNA-Seq data
7.9 years ago by
Rob
7.2k
0
votes
0
replies
9.1k
views
Comment:
C: TPM or FPKM as input values for PCA and WGCNA?
7.9 years ago by
Rob
7.2k
1
vote
1
reply
5.4k
views
Comment:
C: Alignment dropped with Salmon
7.9 years ago by
Rob
7.2k
1
vote
2
replies
5.4k
views
Comment:
C: Alignment dropped with Salmon
7.9 years ago by
Rob
7.2k
1
vote
1
reply
7.5k
views
Comment:
C: Salmon very low mapping
8.0 years ago by
Rob
7.2k
0
votes
2
replies
7.5k
views
Comment:
C: Salmon very low mapping
8.0 years ago by
Rob
7.2k
0
votes
1
reply
7.5k
views
Comment:
C: Salmon very low mapping
8.0 years ago by
Rob
7.2k
1
vote
0
replies
5.4k
views
Comment:
C: Alignment dropped with Salmon
8.0 years ago by
Rob
7.2k
4
votes
0
replies
4.4k
views
Answer:
A: From transcripts counts of Salmon to genes counts needed by edgeR
8.0 years ago by
Rob
7.2k
0
votes
0
replies
3.6k
views
Comment:
C: How to calculate TPM of transcripts with isoforms
8.1 years ago by
Rob
7.2k
2
votes
1
reply
3.6k
views
Answer:
A: How to calculate TPM of transcripts with isoforms
8.1 years ago by
Rob
7.2k
3
votes
0
replies
24k
views
Comment:
C: RNA-Seq analysis using STAR and Salmon
8.1 years ago by
Rob
7.2k
7
votes
0
replies
3.7k
views
Answer:
A: Convert a FASTA Amino Acid Sequence to RNA (Reverse Central Dogma)
8.1 years ago by
Rob
7.2k
0
votes
0
replies
2.1k
views
Answer:
A: Salmon TPMs not the same for each strand individually (--libType IU)?
8.1 years ago by
Rob
7.2k
3
votes
1
reply
6.5k
views
Answer:
A: TPM VS FPKM VS TMM and K-mer specific expression quantification
8.3 years ago by
Rob
7.2k
0
votes
0
replies
5.1k
views
Comment:
C: Reference for Salmon
8.3 years ago by
Rob
7.2k
0
votes
2
replies
5.1k
views
Comment:
C: Reference for Salmon
8.3 years ago by
Rob
7.2k
1
vote
0
replies
14k
views
Answer:
A: Mapping onto the Transcriptome, RNA-seq
8.3 years ago by
Rob
7.2k
3
votes
0
replies
1.9k
views
Comment:
C: salmon kallisto sleuth results in a genome browser ?
8.3 years ago by
Rob
7.2k
1
vote
2
replies
5.1k
views
Answer:
A: Reference for Salmon
8.3 years ago by
Rob
7.2k
367 results • Page
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