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1
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5.9k
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Comment: C: Salmon (error: SAM file and fasta file have different transcript length)
7.1 years ago by Rob 7.2k
0
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1
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5.9k
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Answer: A: Salmon (error: SAM file and fasta file have different transcript length)
7.1 years ago by Rob 7.2k
1
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1
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3.3k
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Comment: C: Interpretation of Salmon quat.sf result
7.1 years ago by Rob 7.2k
6
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0
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4.5k
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Answer: A: RNA-seq: differentially expressed genes without genome reference
updated 7.1 years ago by 45k • written 9.7 years ago by 7.2k
0
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1
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7.1k
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Comment: C: Poor correlation of read count values from STAR and Kallisto
updated 7.1 years ago by 45k • written 9.7 years ago by 7.2k
0
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1
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5.1k
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Comment: C: Maximum size limit for indexing genome with bowtie2 with large index option
7.1 years ago by Rob 7.2k
0
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1
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5.1k
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Comment: C: Maximum size limit for indexing genome with bowtie2 with large index option
7.1 years ago by Rob 7.2k
4
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1
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2.3k
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Answer: A: Will Kallisto or Salmon perform streaming alignment from the Sequence Read Archi
7.1 years ago by Rob 7.2k
1
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0
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5.6k
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Comment: C: Salmon Quantification for RNA-seq Read Pairs with Different Lengths
7.1 years ago by Rob 7.2k
4
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1
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5.6k
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Answer: A: Salmon Quantification for RNA-seq Read Pairs with Different Lengths
7.1 years ago by Rob 7.2k
0
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0
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5.4k
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Comment: C: Salmon quantification vs HTSeq count quantification
7.2 years ago by Rob 7.2k
6
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1
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5.4k
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Answer: A: Salmon quantification vs HTSeq count quantification
7.2 years ago by Rob 7.2k
0
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0
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2.0k
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Comment: C: Salmon Algorithm Binary Search
7.2 years ago by Rob 7.2k
3
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1
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2.0k
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Answer: A: Salmon Algorithm Binary Search
7.2 years ago by Rob 7.2k
2
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1
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4.1k
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Comment: C: Stranded RNA-seq data visualization in UCSC
7.2 years ago by Rob 7.2k
3
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1
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4.1k
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Answer: A: Stranded RNA-seq data visualization in UCSC
7.2 years ago by Rob 7.2k
0
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0
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2.0k
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Comment: C: Conflict of abundances on different taxonomic levels using centrifuge
7.2 years ago by Rob 7.2k
2
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1
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2.0k
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Answer: A: Conflict of abundances on different taxonomic levels using centrifuge
7.2 years ago by Rob 7.2k
0
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0
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11k
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Comment: C: Mapping vs Quasi-Mapping
7.2 years ago by Rob 7.2k
3
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0
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11k
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Comment: C: Mapping vs Quasi-Mapping
7.2 years ago by Rob 7.2k
0
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0
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1.4k
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Answer: A: Bayesian algorithm / HISAT & STAR
7.2 years ago by Rob 7.2k
7
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1
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11k
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Comment: C: Mapping vs Quasi-Mapping
7.2 years ago by Rob 7.2k
16
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1
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11k
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Answer: C: Mapping vs Quasi-Mapping
7.2 years ago by Rob 7.2k
4
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1
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6.8k
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Answer: A: Big differences between mappings computed by Salmon and quantification
7.3 years ago by Rob 7.2k
0
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1
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1.7k
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Comment: C: Compacted de-bruijn graph
7.4 years ago by Rob 7.2k
5
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1
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14k
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Answer: A: CDS vs cDNA vs transcript for mapping RNA-Seq reads
7.5 years ago by Rob 7.2k
2
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2
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2.9k
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Answer: A: Library type warning in Salmon
7.6 years ago by Rob 7.2k
4
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3
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4.6k
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Answer: A: Number of threads in BWA
7.6 years ago by Rob 7.2k
1
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0
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3.3k
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Comment: C: How to find novel isoforms in RNA-Seq Data
7.7 years ago by Rob 7.2k
0
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0
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2.4k
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Answer: A: Regarding GC correction in sequencing data
7.9 years ago by Rob 7.2k
1
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1
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1.7k
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Answer: A: Hierarchical mapping of RNA-Seq data
7.9 years ago by Rob 7.2k
0
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0
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9.1k
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Comment: C: TPM or FPKM as input values for PCA and WGCNA?
7.9 years ago by Rob 7.2k
1
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1
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5.4k
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Comment: C: Alignment dropped with Salmon
7.9 years ago by Rob 7.2k
1
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2
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5.4k
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Comment: C: Alignment dropped with Salmon
7.9 years ago by Rob 7.2k
1
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1
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7.5k
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Comment: C: Salmon very low mapping
8.0 years ago by Rob 7.2k
0
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2
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7.5k
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Comment: C: Salmon very low mapping
8.0 years ago by Rob 7.2k
0
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1
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7.5k
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Comment: C: Salmon very low mapping
8.0 years ago by Rob 7.2k
1
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0
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5.4k
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Comment: C: Alignment dropped with Salmon
8.0 years ago by Rob 7.2k
4
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0
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4.4k
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Answer: A: From transcripts counts of Salmon to genes counts needed by edgeR
8.0 years ago by Rob 7.2k
0
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0
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3.6k
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Comment: C: How to calculate TPM of transcripts with isoforms
8.1 years ago by Rob 7.2k
2
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1
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3.6k
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Answer: A: How to calculate TPM of transcripts with isoforms
8.1 years ago by Rob 7.2k
3
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0
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24k
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Comment: C: RNA-Seq analysis using STAR and Salmon
8.1 years ago by Rob 7.2k
7
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0
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3.7k
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Answer: A: Convert a FASTA Amino Acid Sequence to RNA (Reverse Central Dogma)
8.1 years ago by Rob 7.2k
0
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0
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2.1k
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Answer: A: Salmon TPMs not the same for each strand individually (--libType IU)?
8.1 years ago by Rob 7.2k
3
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1
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6.5k
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Answer: A: TPM VS FPKM VS TMM and K-mer specific expression quantification
8.3 years ago by Rob 7.2k
0
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0
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5.1k
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Comment: C: Reference for Salmon
8.3 years ago by Rob 7.2k
0
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2
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5.1k
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Comment: C: Reference for Salmon
8.3 years ago by Rob 7.2k
1
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0
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14k
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Answer: A: Mapping onto the Transcriptome, RNA-seq
8.3 years ago by Rob 7.2k
3
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0
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1.9k
views
Comment: C: salmon kallisto sleuth results in a genome browser ?
8.3 years ago by Rob 7.2k
1
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2
replies
5.1k
views
Answer: A: Reference for Salmon
8.3 years ago by Rob 7.2k
367 results • Page 5 of 8
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