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2
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1
reply
2.4k
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Answer: C: How to quantify noise level of estimated isoform expression levels from RNA-seq
9.7 years ago by Rob 7.2k
0
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2
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7.1k
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Comment: Comment: Correlation of read count values from STAR and Kallisto
updated 3.3 years ago by 45k • written 9.7 years ago by 7.2k
2
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1
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7.1k
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Comment: Comment: Correlation of read count values from STAR and Kallisto
updated 3.3 years ago by 45k • written 9.7 years ago by 7.2k
1
vote
1
reply
7.1k
views
Comment: Comment: Correlation of read count values from STAR and Kallisto
updated 3.3 years ago by 45k • written 9.7 years ago by 7.2k
0
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0
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7.1k
views
Answer: A: Poor correlation of read count values from STAR and Kallisto
9.7 years ago by Rob 7.2k
0
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0
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5.2k
views
Comment: Comment: Finding isoform expression in RNA-Seq
updated 3.6 years ago by 45k • written 10.1 years ago by 7.2k
0
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1
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5.2k
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Comment: Comment: Finding isoform expression in RNA-Seq
updated 3.6 years ago by 45k • written 10.1 years ago by 7.2k
1
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1
reply
7.9k
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Comment: Comment: Bowtie2 or RSEM (with Bowtie2) alignment of PE reads with reference transcriptom
updated 3.2 years ago by 45k • written 10.1 years ago by 7.2k
1
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0
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12k
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Answer: Answer: Network Comparison by comparing two different adjacency matrices
updated 3.1 years ago by 45k • written 10.1 years ago by 7.2k
0
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1
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9.3k
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Comment: Comment: Salmon: A fast and versatile new tool for RNA-seq quantification
updated 3.6 years ago by 45k • written 10.1 years ago by 7.2k
22
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5
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9.3k
views
Tool: Salmon: A fast and versatile new tool for RNA-seq quantification
RNA-Seq
updated 3.6 years ago by 45k • written 10.9 years ago by 7.2k
3
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1
reply
11k
views
Answer: Answer: Can Kallisto be followed by DESeq, EdgeR or Cuffdiff?
updated 3.1 years ago by 45k • written 10.2 years ago by 7.2k
0
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0
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11k
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Comment: C: Jellyfish -C option explanation
10.2 years ago by Rob 7.2k
0
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1
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11k
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Comment: Comment: Jellyfish -C option explanation
updated 3.0 years ago by 45k • written 10.2 years ago by 7.2k
8
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4
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11k
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Answer: Answer: Jellyfish -C option explanation
updated 3.0 years ago by 45k • written 10.2 years ago by 7.2k
0
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1
reply
4.7k
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Comment: Comment: GATB de Bruijn graph
updated 3.0 years ago by 45k • written 10.3 years ago by 7.2k
4
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0
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3.8k
views
Answer: Answer: Hash Table Vs Suffix Array Alignment Error Tolerance
updated 3.0 years ago by 45k • written 10.3 years ago by 7.2k
0
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1
reply
4.7k
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Comment: Comment: GATB de Bruijn graph
updated 3.0 years ago by 45k • written 10.3 years ago by 7.2k
4
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12
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4.7k
views
GATB de Bruijn graph
sequence gatb
updated 3.0 years ago by 45k • written 10.3 years ago by 7.2k
0
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1
reply
4.7k
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Comment: Comment: GATB de Bruijn graph
updated 3.0 years ago by 45k • written 10.3 years ago by 7.2k
0
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2
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4.7k
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Comment: Comment: GATB de Bruijn graph
updated 3.0 years ago by 45k • written 10.3 years ago by 7.2k
1
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1
reply
11k
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Comment: Comment: Using rna-seq, why map reads to the genome but calculate gene expression by alig
updated 2.9 years ago by 45k • written 10.3 years ago by 7.2k
0
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0
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11k
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Comment: Comment: Using rna-seq, why map reads to the genome but calculate gene expression by alig
updated 2.9 years ago by 45k • written 10.3 years ago by 7.2k
1
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0
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41k
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Comment: C: Transcript to gene level count for DEseq(2) use- Salmon/Sailfish/Kallisto etc.
10.4 years ago by Rob 7.2k
1
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1
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41k
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Comment: Comment: Transcript to gene level count for DEseq(2) use- Salmon/Sailfish/Kallisto etc.
updated 2.9 years ago by 45k • written 10.4 years ago by 7.2k
3
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1
reply
4.0k
views
Answer: Answer: Estimating RPKM or TPM in RNA-Seq data
updated 2.9 years ago by 45k • written 10.4 years ago by 7.2k
1
vote
2
replies
41k
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Comment: Comment: Transcript to gene level count for DEseq(2) use- Salmon/Sailfish/Kallisto etc.
updated 2.9 years ago by 45k • written 10.4 years ago by 7.2k
0
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0
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4.6k
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Comment: Comment: Salmon Kallisto HtSeq-count for gene level analysis - Anecdotal evidence
updated 2.8 years ago by 45k • written 10.4 years ago by 7.2k
0
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1
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4.6k
views
Comment: Comment: Salmon Kallisto HtSeq-count for gene level analysis - Anecdotal evidence
updated 2.8 years ago by 45k • written 10.4 years ago by 7.2k
0
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1
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4.6k
views
Comment: Comment: Salmon Kallisto HtSeq-count for gene level analysis - Anecdotal evidence
updated 2.8 years ago by 45k • written 10.4 years ago by 7.2k
0
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2
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4.6k
views
Comment: Comment: Salmon Kallisto HtSeq-count for gene level analysis - Anecdotal evidence
updated 2.8 years ago by 45k • written 10.4 years ago by 7.2k
1
vote
1
reply
41k
views
Comment: Comment: Transcript to gene level count for DEseq(2) use- Salmon/Sailfish/Kallisto etc.
updated 2.8 years ago by 45k • written 10.5 years ago by 7.2k
5
votes
2
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4.1k
views
Comparing assembled transcripts against a reference
Assembly RNA-Seq
updated 3.4 years ago by 45k • written 10.7 years ago by 7.2k
0
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0
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3.3k
views
Comment: Comment: In search of "good" alternative splicing datasets for benchmarking purposes...
updated 3.5 years ago by 45k • written 10.7 years ago by 7.2k
2
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1
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5.8k
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Answer: Answer: Must paired-end reads be in the same order in the two files for input to Tophat?
updated 3.5 years ago by 45k • written 10.7 years ago by 7.2k
7
votes
1
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14k
views
Answer: Answer: RNA-seq differential expression analysis, which aligner to choose between BWA/to
updated 3.5 years ago by 45k • written 10.7 years ago by 7.2k
0
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2
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7.6k
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Comment: Comment: Keeping paired reads together when sorting BAM file by name
updated 3.6 years ago by 45k • written 10.7 years ago by 7.2k
0
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0
replies
8.7k
views
Comment: Comment: Pandora's Toolbox - a collection of bioinformatics programs
updated 3.6 years ago by 45k • written 10.8 years ago by 7.2k
0
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1
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8.7k
views
Comment: Comment: Pandora's Toolbox - a collection of bioinformatics programs
updated 3.6 years ago by 45k • written 10.8 years ago by 7.2k
1
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1
reply
4.2k
views
Comment: Comment: Best HMM library for bioinformatics
updated 3.7 years ago by 45k • written 10.9 years ago by 7.2k
0
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0
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4.9k
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Comment: Comment: Perplexing Bowtie 2 results
updated 3.7 years ago by 45k • written 11.0 years ago by 7.2k
0
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1
reply
4.9k
views
Comment: Comment: Perplexing Bowtie 2 results
updated 3.7 years ago by 45k • written 11.0 years ago by 7.2k
0
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1
reply
4.9k
views
Comment: Comment: Perplexing Bowtie 2 results
updated 3.7 years ago by 45k • written 11.0 years ago by 7.2k
0
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3
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4.9k
views
Comment: Comment: Perplexing Bowtie 2 results
updated 3.7 years ago by 45k • written 11.0 years ago by 7.2k
5
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11
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4.9k
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Perplexing Bowtie 2 results
RNA-Seq
updated 3.7 years ago by 45k • written 11.0 years ago by 7.2k
1
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2
replies
4.4k
views
Comment: Comment: "Valid" names for paired-end reads
updated 3.7 years ago by 45k • written 11.0 years ago by 7.2k
3
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4
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4.4k
views
"Valid" names for paired-end reads
next-gen-sequencing RNA-Seq
updated 22 months ago by ▴ 140 • written 11.0 years ago by 7.2k
1
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9
replies
3.4k
views
"Un-Projecting" genome alignments onto a transcriptome
RNA-Seq alignment genome
updated 15 months ago by ▴ 100 • written 11.1 years ago by 7.2k
0
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0
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20k
views
Comment: Comment: Long read alignment
updated 4.6 years ago by 45k • written 11.0 years ago by 7.2k
0
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1
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3.4k
views
Comment: Comment: "Un-Projecting" genome alignments onto a transcriptome
updated 3.8 years ago by 45k • written 11.1 years ago by 7.2k
367 results • Page 7 of 8
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