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4
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2
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546
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Answer:
Answer: How to represent arbitrarily length kmer?
9 weeks ago by
Rob
6.9k
3
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0
replies
615
views
Answer:
Answer: Understanding Differing results between STAR and kallisto
4 months ago by
Rob
6.9k
3
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1
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565
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Answer:
Answer: Alternative gap introduced when comparing insertion/deletion results between min
4 months ago by
Rob
6.9k
1
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1
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991
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Answer:
Answer: Salmon ~ Effective Length
5 months ago by
Rob
6.9k
2
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1
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928
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Answer:
Answer: Salmon vs Kallisto vs RSEM
5 months ago by
Rob
6.9k
3
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1
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487
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Answer:
Answer: Number of non-ATCG nucleotides replaced by Salmon
5 months ago by
Rob
6.9k
5
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1
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749
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Answer:
Answer: Details on salmon index
5 months ago by
Rob
6.9k
0
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1
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760
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Answer:
Answer: Mapping vs Alignment mode in Salmon
9 months ago by
Rob
6.9k
6
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0
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1.7k
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Answer:
Answer: is oxford nanopore technology data paired or single end sequencing?
9 months ago by
Rob
6.9k
0
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1
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1.2k
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Answer:
Answer: Downstream analysis from STAR Alignment at transcript level
9 months ago by
Rob
6.9k
2
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1
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863
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Answer:
Answer: salmon with long read
9 months ago by
Rob
6.9k
6
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2
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1.8k
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Answer:
Answer: What Are The Most Influential Bioinformatics/Computational Biology Papers Of 202
11 months ago by
Rob
6.9k
4
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0
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883
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Answer:
Answer: Fetch Fastq files directly for SRA data
13 months ago by
Rob
6.9k
0
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0
replies
1.1k
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Answer:
Answer: scRNAseq: thoughts on merging datasets generating from different version of 10x
15 months ago by
Rob
6.9k
6
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1
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2.5k
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Answer:
Answer: Mapping vs Alignment
16 months ago by
Rob
6.9k
1
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1
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943
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Answer:
Answer: How does salmon uses polyester?
18 months ago by
Rob
6.9k
1
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0
replies
1.0k
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Answer:
Answer: How to get fraction of unspliced reads for specific gene from scRNAseq Cell Rang
19 months ago by
Rob
6.9k
6
votes
2
replies
2.3k
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Answer:
Answer: How does 10x Genomics 3' single cell data have reads aligning to exons that aren
20 months ago by
Rob
6.9k
7
votes
1
reply
3.1k
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Answer:
Answer: long read + salmon? (transcript abundance)
updated 20 months ago by
ATpoint
85k • written 20 months ago by
Rob
6.9k
1
vote
1
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1.1k
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Answer:
Answer: Salmon lib_format_counts.json - explanation
20 months ago by
Rob
6.9k
1
vote
2
replies
1.3k
views
Answer:
Answer: Salmon TPM calculation constant
20 months ago by
Rob
6.9k
1
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1
reply
1.4k
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Answer:
Answer: CellRanger v. 2.0 and v. 7.0
24 months ago by
Rob
6.9k
3
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1
reply
1.1k
views
Answer:
Answer: High discrepancy between Primary estimate and Bootstraps from Salmon
2.0 years ago by
Rob
6.9k
3
votes
0
replies
685
views
Answer:
Answer: Stranded or unstranded? That is the question
2.1 years ago by
Rob
6.9k
2
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1
reply
1.1k
views
Answer:
Answer: Salmon libtype guessing and mapping bias
2.1 years ago by
Rob
6.9k
2
votes
0
replies
3.2k
views
Answer:
Answer: Can bioinformatics Phds be completely or almost completely done remotely?
2.2 years ago by
Rob
6.9k
1
vote
1
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795
views
Answer:
Answer: Splice aware or not for RNA sequence data
2.2 years ago by
Rob
6.9k
2
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0
replies
1.3k
views
Answer:
Answer: strand specificity
2.3 years ago by
Rob
6.9k
2
votes
1
reply
1.9k
views
Answer:
Answer: Help needed to troubleshoot a Bioconda recipe for a Rust tool
2.3 years ago by
Rob
6.9k
3
votes
1
reply
1.9k
views
Answer:
Answer: Effect of Bootstrapping/Gibbs Sampling in Salmon Counts
2.4 years ago by
Rob
6.9k
0
votes
1
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1.0k
views
Answer:
Answer: Is it correct to use Tophat2 directly followed by Cuffquant to only align to the
2.5 years ago by
Rob
6.9k
4
votes
1
reply
2.2k
views
Answer:
Answer: How does Salmon bootstrapping work?
2.5 years ago by
Rob
6.9k
0
votes
0
replies
777
views
Answer:
Answer: Why is an effective length of a trasncript better than normal length?
2.7 years ago by
Rob
6.9k
3
votes
0
replies
3.3k
views
Answer:
Answer: Fastest way to parse through a fasta file in python
2.8 years ago by
Rob
6.9k
4
votes
2
replies
1.3k
views
Answer:
Answer: jellyfish count discrepancy between results obtained with and without -C optio
2.9 years ago by
Rob
6.9k
1
vote
1
reply
2.0k
views
Answer:
Answer: Very low read counts for PD1 when using STAR aligner compared to BWA
3.0 years ago by
Rob
6.9k
4
votes
1
reply
6.4k
views
Answer:
Answer: UMAP vs "rigorous" t-SNE
3.2 years ago by
Rob
6.9k
4
votes
1
reply
2.8k
views
Answer:
Answer: k-mer counters - presence/absence matrix
3.3 years ago by
Rob
6.9k
0
votes
2
replies
2.4k
views
Answer:
Answer: STARsolo --EmptyDrops_CR parameters
3.4 years ago by
Rob
6.9k
2
votes
1
reply
3.2k
views
Answer:
Answer: Star alingment, Salmon quantification
3.5 years ago by
Rob
6.9k
6
votes
1
reply
2.7k
views
Answer:
Answer: Inconsistency between alignment rates of BWA-mem and bowtie2
3.5 years ago by
Rob
6.9k
3
votes
0
replies
2.1k
views
Answer:
C: Quantify Isoforms in RNA-Seq data
3.9 years ago by
Rob
6.9k
10
votes
1
reply
9.0k
views
Answer:
A: Rust or C++, what to learn after Go for high-performance bioinformatics tools?
4.1 years ago by
Rob
6.9k
11
votes
0
replies
9.0k
views
Answer:
A: Rust or C++, what to learn after Go for high-performance bioinformatics tools?
4.1 years ago by
Rob
6.9k
2
votes
1
reply
7.0k
views
Answer:
A: update salmon with conda
4.1 years ago by
Rob
6.9k
4
votes
1
reply
2.9k
views
Answer:
A: Gibbs sampling/bootstrap replicates in Salmon
4.1 years ago by
Rob
6.9k
2
votes
1
reply
3.9k
views
Answer:
A: How can I align single RNA seq(scRNAseq) data by using STAR or another aligner?
4.2 years ago by
Rob
6.9k
2
votes
1
reply
1.8k
views
Answer:
A: rsem-simulate-reads: simulating different data
4.2 years ago by
Rob
6.9k
14
votes
1
reply
10k
views
Answer:
A: How does salmon deal with decoy?
4.2 years ago by
Rob
6.9k
3
votes
1
reply
1.8k
views
Answer:
A: How to get different isoform's counts in different cell by using alevin (salmon
4.3 years ago by
Rob
6.9k
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