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3
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0
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177
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Answer: Answer: Fetch Fastq files directly for SRA data
1 day ago by Rob 6.2k
0
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0
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412
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Answer: Answer: scRNAseq: thoughts on merging datasets generating from different version of 10x
9 weeks ago by Rob 6.2k
5
votes
1
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546
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Answer: Answer: Mapping vs Alignment
12 weeks ago by Rob 6.2k
1
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1
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491
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Answer: Answer: How does salmon uses polyester?
4 months ago by Rob 6.2k
1
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0
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456
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Answer: Answer: How to get fraction of unspliced reads for specific gene from scRNAseq Cell Rang
6 months ago by Rob 6.2k
5
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2
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856
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Answer: Answer: How does 10x Genomics 3' single cell data have reads aligning to exons that aren
6 months ago by Rob 6.2k
4
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1
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1.3k
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Answer: Answer: long read + salmon? (transcript abundance)
updated 6 months ago by 77k • written 6 months ago by 6.2k
1
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1
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619
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Answer: Answer: Salmon lib_format_counts.json - explanation
6 months ago by Rob 6.2k
1
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2
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610
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Answer: Answer: Salmon TPM calculation constant
7 months ago by Rob 6.2k
1
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1
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660
views
Answer: Answer: CellRanger v. 2.0 and v. 7.0
10 months ago by Rob 6.2k
3
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1
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661
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Answer: Answer: High discrepancy between Primary estimate and Bootstraps from Salmon
11 months ago by Rob 6.2k
3
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0
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377
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Answer: Answer: Stranded or unstranded? That is the question
11 months ago by Rob 6.2k
2
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1
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626
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Answer: Answer: Salmon libtype guessing and mapping bias
12 months ago by Rob 6.2k
2
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0
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2.0k
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Answer: Answer: Can bioinformatics Phds be completely or almost completely done remotely?
12 months ago by Rob 6.2k
1
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1
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457
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Answer: Answer: Splice aware or not for RNA sequence data
13 months ago by Rob 6.2k
2
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0
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754
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Answer: Answer: strand specificity
14 months ago by Rob 6.2k
2
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1
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1.3k
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Answer: Answer: Help needed to troubleshoot a Bioconda recipe for a Rust tool
14 months ago by Rob 6.2k
3
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1
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1.0k
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Answer: Answer: Effect of Bootstrapping/Gibbs Sampling in Salmon Counts
16 months ago by Rob 6.2k
0
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1
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693
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Answer: Answer: Is it correct to use Tophat2 directly followed by Cuffquant to only align to the
16 months ago by Rob 6.2k
4
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1
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1.3k
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Answer: Answer: How does Salmon bootstrapping work?
17 months ago by Rob 6.2k
0
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0
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490
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Answer: Answer: Why is an effective length of a trasncript better than normal length?
19 months ago by Rob 6.2k
3
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0
replies
2.0k
views
Answer: Answer: Fastest way to parse through a fasta file in python
20 months ago by Rob 6.2k
4
votes
2
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891
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Answer: Answer: jellyfish count discrepancy between results obtained with and without -C optio
21 months ago by Rob 6.2k
1
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1
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1.4k
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Answer: Answer: Very low read counts for PD1 when using STAR aligner compared to BWA
23 months ago by Rob 6.2k
4
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1
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5.6k
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Answer: Answer: UMAP vs "rigorous" t-SNE
2.1 years ago by Rob 6.2k
4
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1
reply
1.9k
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Answer: Answer: k-mer counters - presence/absence matrix
2.1 years ago by Rob 6.2k
0
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2
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1.7k
views
Answer: Answer: STARsolo --EmptyDrops_CR parameters
2.3 years ago by Rob 6.2k
2
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1
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2.1k
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Answer: Answer: Star alingment, Salmon quantification
2.4 years ago by Rob 6.2k
4
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1
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1.9k
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Answer: Answer: Inconsistency between alignment rates of BWA-mem and bowtie2
2.4 years ago by Rob 6.2k
3
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0
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1.4k
views
Answer: C: Quantify Isoforms in RNA-Seq data
2.8 years ago by Rob 6.2k
10
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1
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7.1k
views
Answer: A: Rust or C++, what to learn after Go for high-performance bioinformatics tools?
2.9 years ago by Rob 6.2k
11
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0
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7.1k
views
Answer: A: Rust or C++, what to learn after Go for high-performance bioinformatics tools?
2.9 years ago by Rob 6.2k
2
votes
1
reply
4.9k
views
Answer: A: update salmon with conda
2.9 years ago by Rob 6.2k
4
votes
1
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2.4k
views
Answer: A: Gibbs sampling/bootstrap replicates in Salmon
3.0 years ago by Rob 6.2k
2
votes
1
reply
2.8k
views
Answer: A: How can I align single RNA seq(scRNAseq) data by using STAR or another aligner?
3.1 years ago by Rob 6.2k
2
votes
1
reply
1.4k
views
Answer: A: rsem-simulate-reads: simulating different data
3.1 years ago by Rob 6.2k
14
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1
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7.4k
views
Answer: A: How does salmon deal with decoy?
3.1 years ago by Rob 6.2k
3
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1
reply
1.4k
views
Answer: A: How to get different isoform's counts in different cell by using alevin (salmon
3.2 years ago by Rob 6.2k
2
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0
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843
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Answer: A: Trimmomatic and Salmon error
3.2 years ago by Rob 6.2k
3
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1
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1.7k
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Answer: A: Transcript level counts from full length scRNA data
3.3 years ago by Rob 6.2k
2
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1
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3.6k
views
Answer: A: DEseq2 results differs greatly when comparing output from STAR/featureCounts and
3.3 years ago by Rob 6.2k
3
votes
0
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3.2k
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Answer: A: Question related to time complexity of Needleman-Wunsch Algorithm
3.3 years ago by Rob 6.2k
1
vote
1
reply
2.0k
views
Answer: A: hisat2 salmon alignment error
3.5 years ago by Rob 6.2k
5
votes
3
replies
1.4k
views
Answer: C: can salmon distinguish similar transcript?
3.6 years ago by Rob 6.2k
4
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1
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3.3k
views
Answer: A: warning when creating salmon index from GENCODE transcriptome
3.6 years ago by Rob 6.2k
2
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1
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1.1k
views
Answer: C: Salmon only processes human reads from PDX data
3.7 years ago by Rob 6.2k
6
votes
2
replies
43k
views
Answer: A: Up-to-date Online RNA Sequence Analysis Training/Courses/Papers?
updated 3.7 years ago by 40k • written 7.7 years ago by 6.2k
3
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0
replies
6.5k
views
Answer: A: K-mers using JEllyfish
updated 3.7 years ago by 40k • written 9.3 years ago by 6.2k
5
votes
1
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4.3k
views
Answer: A: Sailfish TPM normalization: does it take into account the size the library?
updated 3.7 years ago by 40k • written 7.7 years ago by 6.2k
4
votes
4
replies
5.1k
views
Answer: A: confusion in the DeBruijn Graph
updated 3.7 years ago by 40k • written 7.7 years ago by 6.2k
122 results • Page 1 of 3
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