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Comment: Comment: Single-cell ambient RNA correction: SoupX vs decontX contamination fraction
7 days ago by e.r.zakiev ▴ 210
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Comment: Comment: Parametric or non-parametric tests for qPCR significance testing between treatme
20 days ago by e.r.zakiev ▴ 210
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650
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Comment: Comment: Very low RNA splicing rate for pulmonary AT2 cells
24 days ago by e.r.zakiev ▴ 210
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1.3k
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Comment: Comment: Classifying repeat features from Ensembl
5 weeks ago by e.r.zakiev ▴ 210
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6.6k
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Comment: Comment: Repeat masked gtf files from ensembl
6 weeks ago by e.r.zakiev ▴ 210
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6.6k
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Comment: Comment: Repeat masked gtf files from ensembl
6 weeks ago by e.r.zakiev ▴ 210
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1
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6.6k
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Comment: Comment: Repeat masked gtf files from ensembl
6 weeks ago by e.r.zakiev ▴ 210
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1
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1.3k
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Comment: Comment: Classifying repeat features from Ensembl
6 weeks ago by e.r.zakiev ▴ 210
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6.6k
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Comment: Comment: Repeat masked gtf files from ensembl
6 weeks ago by e.r.zakiev ▴ 210
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650
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Comment: Comment: Very low RNA splicing rate for pulmonary AT2 cells
7 weeks ago by e.r.zakiev ▴ 210
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1
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650
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Comment: Comment: Very low RNA splicing rate for pulmonary AT2 cells
updated 7 weeks ago by 44k • written 7 weeks ago by ▴ 210
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646
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Comment: Comment: Applicability of the SoupX ambient mRNA decontamination technique to fixed and/o
9 weeks ago by e.r.zakiev ▴ 210
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1.4k
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Comment: Comment: Removal of mRNA contamination from scRNA-seq data using SoupX: How to proceed wh
9 weeks ago by e.r.zakiev ▴ 210
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1.4k
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Comment: Comment: Removal of mRNA contamination from scRNA-seq data using SoupX: How to proceed wh
9 weeks ago by e.r.zakiev ▴ 210
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1.7k
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Comment: Comment: what's the disadvantage of removing cell-cylcle gene compared with regressing ou
3 months ago by e.r.zakiev ▴ 210
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1.7k
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Comment: Comment: what's the disadvantage of removing cell-cylcle gene compared with regressing ou
3 months ago by e.r.zakiev ▴ 210
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1.7k
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Comment: Comment: what's the disadvantage of removing cell-cylcle gene compared with regressing ou
3 months ago by e.r.zakiev ▴ 210
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1.7k
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Comment: Comment: what's the disadvantage of removing cell-cylcle gene compared with regressing ou
3 months ago by e.r.zakiev ▴ 210
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5.3k
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Comment: Comment: How long it takes to run repeat masker on a full genome
4 months ago by e.r.zakiev ▴ 210
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5.3k
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Comment: Comment: How long it takes to run repeat masker on a full genome
4 months ago by e.r.zakiev ▴ 210
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493
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Comment: Comment: Single-cell RNA-seq: Preprocessing: Clustering space and evaluation
4 months ago by e.r.zakiev ▴ 210
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10k
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Comment: Comment: best way to visualize bam file
4 months ago by e.r.zakiev ▴ 210
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890
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Comment: Comment: from fasta to gtf format?
4 months ago by e.r.zakiev ▴ 210
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21k
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Comment: Comment: how do I run repeat masker
4 months ago by e.r.zakiev ▴ 210
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6.6k
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Comment: Comment: Repeat masked gtf files from ensembl
4 months ago by e.r.zakiev ▴ 210
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1.2k
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Comment: Comment: How to get the gft file to run velocyto for velocity analysis?
4 months ago by e.r.zakiev ▴ 210
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940
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Comment: Comment: Why runing scDblFinder before and after removing low QC cells gives different re
5 months ago by e.r.zakiev ▴ 210
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2.5k
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Comment: Comment: Are liger or Seurat CCA good strategies for multiple scRNA-seq data integration?
6 months ago by e.r.zakiev ▴ 210
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454
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Comment: Comment: Which embedding for clustering of cells in single-cell RNAseq?
7 months ago by e.r.zakiev ▴ 210
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2.4k
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Comment: Comment: Clustering in single cell
7 months ago by e.r.zakiev ▴ 210
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2.4k
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Comment: Comment: Clustering in single cell
7 months ago by e.r.zakiev ▴ 210
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2.4k
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Comment: Comment: Clustering in single cell
7 months ago by e.r.zakiev ▴ 210
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2.4k
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Comment: Comment: Clustering in single cell
7 months ago by e.r.zakiev ▴ 210
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2.3k
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Comment: Comment: Clustering resolution single-cell RNA-seq
7 months ago by e.r.zakiev ▴ 210
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1.8k
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Comment: Comment: When should I NOT apply batch correction for my single-cell RNAseq data?
7 months ago by e.r.zakiev ▴ 210
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1.2k
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Comment: Comment: Good alignment rate for DNA-seq data
7 months ago by e.r.zakiev ▴ 210
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1.8k
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Comment: Comment: When should I NOT apply batch correction for my single-cell RNAseq data?
7 months ago by e.r.zakiev ▴ 210
1
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1.8k
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Comment: Comment: When should I NOT apply batch correction for my single-cell RNAseq data?
7 months ago by e.r.zakiev ▴ 210
1
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691
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Comment: Comment: How to decide what gene set libraries to use in your GSEA analysis
7 months ago by e.r.zakiev ▴ 210
3
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1.8k
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Comment: Comment: When should I NOT apply batch correction for my single-cell RNAseq data?
7 months ago by e.r.zakiev ▴ 210
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1
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614
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Comment: Comment: Cloud Computing w.r.t. AWS, Google Cloud, Microsoft Azure
7 months ago by e.r.zakiev ▴ 210
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1.2k
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Comment: Comment: remove batch effect
7 months ago by e.r.zakiev ▴ 210
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1.4k
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Comment: Comment: Why is chromHMM's binarizeBed with the -peaks argument not recommended for broad
8 months ago by e.r.zakiev ▴ 210
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1.5k
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Comment: Comment: Extract RPKM values from Diffbind
9 months ago by e.r.zakiev ▴ 210
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1
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728
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Comment: Comment: barcodes not show up in overrepresented sequences in FASTQC
10 months ago by e.r.zakiev ▴ 210
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1
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728
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Comment: Comment: barcodes not show up in overrepresented sequences in FASTQC
10 months ago by e.r.zakiev ▴ 210
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489
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Comment: Comment: Panther db Reference List
11 months ago by e.r.zakiev ▴ 210
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36k
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Comment: Comment: ATAC-seq peak calling with MACS
13 months ago by e.r.zakiev ▴ 210
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1
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2.8k
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Comment: Comment: ClusterProfiler enrichKEGG – remove organism name in plots?
14 months ago by e.r.zakiev ▴ 210
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1
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1.4k
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Comment: Comment: msigdbr returns the same genesets for mouse as in for human,
14 months ago by e.r.zakiev ▴ 210
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