Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
1
reply
1.5k
views
Comment: Comment: LogFC on geometric means vs on arithmetic means. Presto vs Seurat
3 months ago by e.r.zakiev ▴ 260
3
votes
6
replies
1.5k
views
Forum: LogFC on geometric means vs on arithmetic means. Presto vs Seurat
Presto Seurat logFC general questions
updated 3 months ago by 89k • written 3 months ago by ▴ 260
0
votes
0
replies
2.9k
views
Comment: Comment: How do I change the title font size in ViolinPlot (Seurat)
4 months ago by e.r.zakiev ▴ 260
0
votes
1
reply
1.1k
views
Comment: Comment: Cytoscape Tetramer Error Without Hints
7 months ago by e.r.zakiev ▴ 260
1
vote
1
reply
1.9k
views
Comment: Comment: ChromHMM - annotation of chromatin states
9 months ago by e.r.zakiev ▴ 260
1
vote
1
reply
1.9k
views
Comment: Comment: ChromHMM - annotation of chromatin states
9 months ago by e.r.zakiev ▴ 260
0
votes
1
reply
1.9k
views
Comment: Comment: ChromHMM - annotation of chromatin states
9 months ago by e.r.zakiev ▴ 260
0
votes
0
replies
6.8k
views
Comment: Comment: How do I load a peak file in ChIPseeker?
13 months ago by e.r.zakiev ▴ 260
0
votes
1
reply
6.0k
views
Comment: Comment: associate GO ID with GO description
16 months ago by e.r.zakiev ▴ 260
0
votes
1
reply
883
views
Answer: Answer: Problem in RNASeq data analysis
16 months ago by e.r.zakiev ▴ 260
0
votes
1
reply
6.2k
views
Comment: Comment: Single-cell ambient RNA correction: SoupX vs decontX contamination fraction
17 months ago by e.r.zakiev ▴ 260
0
votes
0
replies
2.6k
views
Comment: Comment: Parametric or non-parametric tests for qPCR significance testing between treatme
18 months ago by e.r.zakiev ▴ 260
0
votes
0
replies
2.0k
views
Comment: Comment: Very low RNA splicing rate for pulmonary AT2 cells
18 months ago by e.r.zakiev ▴ 260
4
votes
7
replies
2.0k
views
Very low RNA splicing rate for pulmonary AT2 cells
RNA-velocity scVelo scRNA-seq splicing
18 months ago by e.r.zakiev ▴ 260
1
vote
1
reply
2.0k
views
Answer: Answer: Very low RNA splicing rate for pulmonary AT2 cells
18 months ago by e.r.zakiev ▴ 260
0
votes
0
replies
2.3k
views
Comment: Comment: Classifying repeat features from Ensembl
18 months ago by e.r.zakiev ▴ 260
0
votes
0
replies
11k
views
Comment: Comment: Repeat masked gtf files from ensembl
18 months ago by e.r.zakiev ▴ 260
0
votes
1
reply
11k
views
Comment: Comment: Repeat masked gtf files from ensembl
18 months ago by e.r.zakiev ▴ 260
0
votes
1
reply
11k
views
Comment: Comment: Repeat masked gtf files from ensembl
19 months ago by e.r.zakiev ▴ 260
0
votes
1
reply
2.3k
views
Comment: Comment: Classifying repeat features from Ensembl
19 months ago by e.r.zakiev ▴ 260
0
votes
0
replies
11k
views
Comment: Comment: Repeat masked gtf files from ensembl
19 months ago by e.r.zakiev ▴ 260
0
votes
0
replies
2.0k
views
Comment: Comment: Very low RNA splicing rate for pulmonary AT2 cells
19 months ago by e.r.zakiev ▴ 260
0
votes
1
reply
2.0k
views
Comment: Comment: Very low RNA splicing rate for pulmonary AT2 cells
updated 19 months ago by 45k • written 19 months ago by ▴ 260
0
votes
0
replies
1.4k
views
Comment: Comment: Applicability of the SoupX ambient mRNA decontamination technique to fixed and/o
19 months ago by e.r.zakiev ▴ 260
0
votes
0
replies
2.5k
views
Comment: Comment: Removal of mRNA contamination from scRNA-seq data using SoupX: How to proceed wh
19 months ago by e.r.zakiev ▴ 260
0
votes
0
replies
2.5k
views
Comment: Comment: Removal of mRNA contamination from scRNA-seq data using SoupX: How to proceed wh
19 months ago by e.r.zakiev ▴ 260
1
vote
2
replies
1.4k
views
Applicability of the SoupX ambient mRNA decontamination technique to fixed and/or multiplexed scRNAseq experiments
SoupX scRNA-seq
19 months ago by e.r.zakiev ▴ 260
0
votes
0
replies
4.7k
views
Comment: Comment: what's the disadvantage of removing cell-cylcle gene compared with regressing ou
21 months ago by e.r.zakiev ▴ 260
0
votes
1
reply
4.7k
views
Comment: Comment: what's the disadvantage of removing cell-cylcle gene compared with regressing ou
21 months ago by e.r.zakiev ▴ 260
0
votes
0
replies
4.7k
views
Comment: Comment: what's the disadvantage of removing cell-cylcle gene compared with regressing ou
21 months ago by e.r.zakiev ▴ 260
2
votes
1
reply
1.5k
views
Data scaling in single-cell RNAseq - sample-wise or on the full set?
scRNA-seq seurat
updated 21 months ago by ★ 3.1k • written 21 months ago by ▴ 260
0
votes
1
reply
4.7k
views
Comment: Comment: what's the disadvantage of removing cell-cylcle gene compared with regressing ou
21 months ago by e.r.zakiev ▴ 260
0
votes
0
replies
6.8k
views
Comment: Comment: How long it takes to run repeat masker on a full genome
21 months ago by e.r.zakiev ▴ 260
0
votes
1
reply
6.8k
views
Comment: Comment: How long it takes to run repeat masker on a full genome
21 months ago by e.r.zakiev ▴ 260
0
votes
0
replies
2.5k
views
Comment: Comment: Single-cell RNA-seq: Preprocessing: Clustering space and evaluation
21 months ago by e.r.zakiev ▴ 260
0
votes
0
replies
13k
views
Comment: Comment: best way to visualize bam file
21 months ago by e.r.zakiev ▴ 260
0
votes
0
replies
1.5k
views
Comment: Comment: from fasta to gtf format?
21 months ago by e.r.zakiev ▴ 260
0
votes
1
reply
27k
views
Comment: Comment: how do I run repeat masker
21 months ago by e.r.zakiev ▴ 260
0
votes
1
reply
11k
views
Comment: Comment: Repeat masked gtf files from ensembl
21 months ago by e.r.zakiev ▴ 260
0
votes
0
replies
4.0k
views
Comment: Comment: How to get the gft file to run velocyto for velocity analysis?
21 months ago by e.r.zakiev ▴ 260
0
votes
0
replies
2.4k
views
Comment: Comment: Why runing scDblFinder before and after removing low QC cells gives different re
23 months ago by e.r.zakiev ▴ 260
0
votes
0
replies
562
views
cNMF vs LIGER
NMF correction batch
23 months ago by e.r.zakiev ▴ 260
0
votes
0
replies
3.1k
views
Comment: Comment: Are liger or Seurat CCA good strategies for multiple scRNA-seq data integration?
23 months ago by e.r.zakiev ▴ 260
0
votes
0
replies
750
views
P-value for comparing GSVA scores
GSVA
updated 2.0 years ago by 45k • written 2.0 years ago by ▴ 260
0
votes
0
replies
1.5k
views
Comment: Comment: Which embedding for clustering of cells in single-cell RNAseq?
2.0 years ago by e.r.zakiev ▴ 260
0
votes
0
replies
6.4k
views
Comment: Comment: Clustering in single cell
2.0 years ago by e.r.zakiev ▴ 260
1
vote
2
replies
1.5k
views
Which embedding for clustering of cells in single-cell RNAseq?
UMAP PCA ICA clustering tSNE
5 months ago by e.r.zakiev ▴ 260
3
votes
0
replies
3.3k
views
Answer: Answer: Cluster annotation in single cell
2.0 years ago by e.r.zakiev ▴ 260
0
votes
0
replies
6.4k
views
Comment: Comment: Clustering in single cell
2.0 years ago by e.r.zakiev ▴ 260
1
vote
0
replies
6.4k
views
Comment: Comment: Clustering in single cell
2.0 years ago by e.r.zakiev ▴ 260
98 results • Page 1 of 2
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6