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Comment:
Comment: How do I change the title font size in ViolinPlot (Seurat)
24 days ago by
e.r.zakiev
▴ 260
0
votes
1
reply
957
views
Comment:
Comment: Cytoscape Tetramer Error Without Hints
3 months ago by
e.r.zakiev
▴ 260
1
vote
1
reply
1.5k
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Comment:
Comment: ChromHMM - annotation of chromatin states
5 months ago by
e.r.zakiev
▴ 260
1
vote
1
reply
1.5k
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Comment:
Comment: ChromHMM - annotation of chromatin states
5 months ago by
e.r.zakiev
▴ 260
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1.5k
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Comment:
Comment: ChromHMM - annotation of chromatin states
5 months ago by
e.r.zakiev
▴ 260
0
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0
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6.2k
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Comment:
Comment: How do I load a peak file in ChIPseeker?
9 months ago by
e.r.zakiev
▴ 260
0
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1
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5.6k
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Comment:
Comment: associate GO ID with GO description
12 months ago by
e.r.zakiev
▴ 260
0
votes
1
reply
731
views
Answer:
Answer: Problem in RNASeq data analysis
12 months ago by
e.r.zakiev
▴ 260
0
votes
1
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4.0k
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Comment:
Comment: Single-cell ambient RNA correction: SoupX vs decontX contamination fraction
13 months ago by
e.r.zakiev
▴ 260
0
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0
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2.5k
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Comment:
Comment: Parametric or non-parametric tests for qPCR significance testing between treatme
14 months ago by
e.r.zakiev
▴ 260
0
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0
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1.7k
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Comment:
Comment: Very low RNA splicing rate for pulmonary AT2 cells
14 months ago by
e.r.zakiev
▴ 260
4
votes
7
replies
1.7k
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Very low RNA splicing rate for pulmonary AT2 cells
RNA-velocity
scVelo
scRNA-seq
splicing
14 months ago by
e.r.zakiev
▴ 260
1
vote
1
reply
1.7k
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Answer:
Answer: Very low RNA splicing rate for pulmonary AT2 cells
14 months ago by
e.r.zakiev
▴ 260
0
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0
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2.0k
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Comment:
Comment: Classifying repeat features from Ensembl
15 months ago by
e.r.zakiev
▴ 260
0
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0
replies
9.8k
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Comment:
Comment: Repeat masked gtf files from ensembl
15 months ago by
e.r.zakiev
▴ 260
0
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1
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9.8k
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Comment:
Comment: Repeat masked gtf files from ensembl
15 months ago by
e.r.zakiev
▴ 260
0
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1
reply
9.8k
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Comment:
Comment: Repeat masked gtf files from ensembl
15 months ago by
e.r.zakiev
▴ 260
0
votes
1
reply
2.0k
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Comment:
Comment: Classifying repeat features from Ensembl
15 months ago by
e.r.zakiev
▴ 260
0
votes
0
replies
9.8k
views
Comment:
Comment: Repeat masked gtf files from ensembl
15 months ago by
e.r.zakiev
▴ 260
0
votes
0
replies
1.7k
views
Comment:
Comment: Very low RNA splicing rate for pulmonary AT2 cells
15 months ago by
e.r.zakiev
▴ 260
0
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1
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1.7k
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Comment:
Comment: Very low RNA splicing rate for pulmonary AT2 cells
updated 15 months ago by
Ram
45k • written 15 months ago by
e.r.zakiev
▴ 260
0
votes
0
replies
1.3k
views
Comment:
Comment: Applicability of the SoupX ambient mRNA decontamination technique to fixed and/o
15 months ago by
e.r.zakiev
▴ 260
0
votes
0
replies
2.2k
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Comment:
Comment: Removal of mRNA contamination from scRNA-seq data using SoupX: How to proceed wh
15 months ago by
e.r.zakiev
▴ 260
0
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0
replies
2.2k
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Comment:
Comment: Removal of mRNA contamination from scRNA-seq data using SoupX: How to proceed wh
15 months ago by
e.r.zakiev
▴ 260
1
vote
2
replies
1.3k
views
Applicability of the SoupX ambient mRNA decontamination technique to fixed and/or multiplexed scRNAseq experiments
SoupX
scRNA-seq
15 months ago by
e.r.zakiev
▴ 260
0
votes
0
replies
4.0k
views
Comment:
Comment: what's the disadvantage of removing cell-cylcle gene compared with regressing ou
17 months ago by
e.r.zakiev
▴ 260
0
votes
1
reply
4.0k
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Comment:
Comment: what's the disadvantage of removing cell-cylcle gene compared with regressing ou
17 months ago by
e.r.zakiev
▴ 260
0
votes
0
replies
4.0k
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Comment:
Comment: what's the disadvantage of removing cell-cylcle gene compared with regressing ou
17 months ago by
e.r.zakiev
▴ 260
2
votes
1
reply
1.1k
views
Data scaling in single-cell RNAseq - sample-wise or on the full set?
scRNA-seq
seurat
updated 17 months ago by
bk11
★ 3.1k • written 17 months ago by
e.r.zakiev
▴ 260
0
votes
1
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4.0k
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Comment:
Comment: what's the disadvantage of removing cell-cylcle gene compared with regressing ou
17 months ago by
e.r.zakiev
▴ 260
0
votes
0
replies
6.4k
views
Comment:
Comment: How long it takes to run repeat masker on a full genome
18 months ago by
e.r.zakiev
▴ 260
0
votes
1
reply
6.4k
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Comment:
Comment: How long it takes to run repeat masker on a full genome
18 months ago by
e.r.zakiev
▴ 260
0
votes
0
replies
1.8k
views
Comment:
Comment: Single-cell RNA-seq: Preprocessing: Clustering space and evaluation
18 months ago by
e.r.zakiev
▴ 260
0
votes
0
replies
13k
views
Comment:
Comment: best way to visualize bam file
18 months ago by
e.r.zakiev
▴ 260
0
votes
0
replies
1.3k
views
Comment:
Comment: from fasta to gtf format?
18 months ago by
e.r.zakiev
▴ 260
0
votes
1
reply
26k
views
Comment:
Comment: how do I run repeat masker
18 months ago by
e.r.zakiev
▴ 260
0
votes
1
reply
9.8k
views
Comment:
Comment: Repeat masked gtf files from ensembl
18 months ago by
e.r.zakiev
▴ 260
0
votes
0
replies
3.1k
views
Comment:
Comment: How to get the gft file to run velocyto for velocity analysis?
18 months ago by
e.r.zakiev
▴ 260
0
votes
0
replies
2.0k
views
Comment:
Comment: Why runing scDblFinder before and after removing low QC cells gives different re
19 months ago by
e.r.zakiev
▴ 260
0
votes
0
replies
474
views
cNMF vs LIGER
NMF
correction
batch
19 months ago by
e.r.zakiev
▴ 260
0
votes
0
replies
3.0k
views
Comment:
Comment: Are liger or Seurat CCA good strategies for multiple scRNA-seq data integration?
19 months ago by
e.r.zakiev
▴ 260
0
votes
0
replies
655
views
P-value for comparing GSVA scores
GSVA
updated 20 months ago by
Ram
45k • written 20 months ago by
e.r.zakiev
▴ 260
0
votes
0
replies
1.2k
views
Comment:
Comment: Which embedding for clustering of cells in single-cell RNAseq?
20 months ago by
e.r.zakiev
▴ 260
0
votes
0
replies
5.7k
views
Comment:
Comment: Clustering in single cell
20 months ago by
e.r.zakiev
▴ 260
1
vote
2
replies
1.2k
views
Which embedding for clustering of cells in single-cell RNAseq?
UMAP
PCA
ICA
clustering
tSNE
6 weeks ago by
e.r.zakiev
▴ 260
3
votes
0
replies
2.9k
views
Answer:
Answer: Cluster annotation in single cell
21 months ago by
e.r.zakiev
▴ 260
0
votes
0
replies
5.7k
views
Comment:
Comment: Clustering in single cell
21 months ago by
e.r.zakiev
▴ 260
1
vote
0
replies
5.7k
views
Comment:
Comment: Clustering in single cell
21 months ago by
e.r.zakiev
▴ 260
0
votes
1
reply
5.7k
views
Comment:
Comment: Clustering in single cell
21 months ago by
e.r.zakiev
▴ 260
0
votes
0
replies
3.0k
views
Comment:
Comment: Clustering resolution single-cell RNA-seq
21 months ago by
e.r.zakiev
▴ 260
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