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Comment:
Comment: msigdbr returns the same genesets for mouse as in for human,
2 days ago by
e.r.zakiev
▴ 30
1
vote
0
replies
479
views
Comment:
Comment: Sorting a STAR-output bam file with samtools leads to a significant reduction in
3 days ago by
e.r.zakiev
▴ 30
0
votes
0
replies
479
views
Comment:
Comment: Sorting a STAR-output bam file with samtools leads to a significant reduction in
3 days ago by
e.r.zakiev
▴ 30
0
votes
0
replies
520
views
Comment:
Comment: msigdbr returns the same genesets for mouse as in for human,
3 days ago by
e.r.zakiev
▴ 30
0
votes
0
replies
5.1k
views
Comment:
Comment: Ensembl Hg38 dna, dna_rm, and dna_sm
4 days ago by
e.r.zakiev
▴ 30
2
votes
5
replies
520
views
msigdbr returns the same genesets for mouse as in for human,
msigdbr
updated 10 hours ago by
igor
13k • written 4 days ago by
e.r.zakiev
▴ 30
0
votes
0
replies
17k
views
Comment:
Comment: Cell Type Marker Databases?
4 days ago by
e.r.zakiev
▴ 30
11
votes
8
replies
479
views
Sorting a STAR-output bam file with samtools leads to a significant reduction in size of the sorted bam file
samtools
STAR
3 days ago by
e.r.zakiev
▴ 30
0
votes
0
replies
8.8k
views
Comment:
Comment: How to submit multithreaded jobs on SLURM and determine number of threads?
8 days ago by
e.r.zakiev
▴ 30
0
votes
0
replies
162
views
Double-pass with STAR for better detection of spliced variants in assessing quality of FFPE RNAseq data: should I go for it?
RNA-seq
STAR
updated 7 days ago by
Ram
38k • written 8 days ago by
e.r.zakiev
▴ 30
0
votes
1
reply
1.5k
views
Comment:
Comment: Splice aware vs splice unaware aligners?
8 days ago by
e.r.zakiev
▴ 30
0
votes
0
replies
36k
views
Comment:
Comment: Snakemake vs. Nextflow: strengths and weaknesses
11 days ago by
e.r.zakiev
▴ 30
0
votes
0
replies
32k
views
Comment:
Comment: Transcript to gene level count for DEseq(2) use- Salmon/Sailfish/Kallisto etc.
11 days ago by
e.r.zakiev
▴ 30
0
votes
1
reply
3.8k
views
Comment:
Comment: What does the decimal ending of a transcript id mean?
11 days ago by
e.r.zakiev
▴ 30
3
votes
1
reply
322
views
Which reference transcriptome/genome to use for mus musculus if I know the particular strain involved in the experiment?
mice
alignment
genome
transcriptome
updated 21 days ago by
Ram
38k • written 21 days ago by
e.r.zakiev
▴ 30
0
votes
0
replies
15k
views
Comment:
Comment: RNA-Seq analysis using STAR and Salmon
21 days ago by
e.r.zakiev
▴ 30
0
votes
1
reply
883
views
Comment:
Comment: Reference genome
21 days ago by
e.r.zakiev
▴ 30
0
votes
0
replies
406
views
Comment:
Comment: blast engine error empty blast query vector
28 days ago by
e.r.zakiev
▴ 30
2
votes
1
reply
183
views
TruSeq Illumina adapters are BLASTed with a high confidence to some genes/terms
RNAseq
adapters
Truseq
BLAST
updated 4 weeks ago by
ATpoint
70k • written 4 weeks ago by
e.r.zakiev
▴ 30
0
votes
0
replies
3.5k
views
Comment:
Comment: Methodological problems are extremely common for enrichment analysis - beware th
5 months ago by
e.r.zakiev
▴ 30
0
votes
0
replies
3.5k
views
Comment:
Comment: Methodological problems are extremely common for enrichment analysis - beware th
5 months ago by
e.r.zakiev
▴ 30
1
vote
0
replies
416
views
Answer:
Answer: Gene Rank for GSEA Preranked analysis?
5 months ago by
e.r.zakiev
▴ 30
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