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Comment: Comment: msigdbr returns the same genesets for mouse as in for human,
2 days ago by e.r.zakiev ▴ 30
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479
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Comment: Comment: Sorting a STAR-output bam file with samtools leads to a significant reduction in
3 days ago by e.r.zakiev ▴ 30
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0
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479
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Comment: Comment: Sorting a STAR-output bam file with samtools leads to a significant reduction in
3 days ago by e.r.zakiev ▴ 30
0
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0
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520
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Comment: Comment: msigdbr returns the same genesets for mouse as in for human,
3 days ago by e.r.zakiev ▴ 30
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5.1k
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Comment: Comment: Ensembl Hg38 dna, dna_rm, and dna_sm
4 days ago by e.r.zakiev ▴ 30
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5
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520
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msigdbr returns the same genesets for mouse as in for human,
msigdbr
updated 10 hours ago by 13k • written 4 days ago by ▴ 30
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17k
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Comment: Comment: Cell Type Marker Databases?
4 days ago by e.r.zakiev ▴ 30
11
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8
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479
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Sorting a STAR-output bam file with samtools leads to a significant reduction in size of the sorted bam file
samtools STAR
3 days ago by e.r.zakiev ▴ 30
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8.8k
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Comment: Comment: How to submit multithreaded jobs on SLURM and determine number of threads?
8 days ago by e.r.zakiev ▴ 30
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162
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Double-pass with STAR for better detection of spliced variants in assessing quality of FFPE RNAseq data: should I go for it?
RNA-seq STAR
updated 7 days ago by 38k • written 8 days ago by ▴ 30
0
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1
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1.5k
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Comment: Comment: Splice aware vs splice unaware aligners?
8 days ago by e.r.zakiev ▴ 30
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36k
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Comment: Comment: Snakemake vs. Nextflow: strengths and weaknesses
11 days ago by e.r.zakiev ▴ 30
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32k
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Comment: Comment: Transcript to gene level count for DEseq(2) use- Salmon/Sailfish/Kallisto etc.
11 days ago by e.r.zakiev ▴ 30
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3.8k
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Comment: Comment: What does the decimal ending of a transcript id mean?
11 days ago by e.r.zakiev ▴ 30
3
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1
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322
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Which reference transcriptome/genome to use for mus musculus if I know the particular strain involved in the experiment?
mice alignment genome transcriptome
updated 21 days ago by 38k • written 21 days ago by ▴ 30
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15k
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Comment: Comment: RNA-Seq analysis using STAR and Salmon
21 days ago by e.r.zakiev ▴ 30
0
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1
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883
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Comment: Comment: Reference genome
21 days ago by e.r.zakiev ▴ 30
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406
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Comment: Comment: blast engine error empty blast query vector
28 days ago by e.r.zakiev ▴ 30
2
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1
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183
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TruSeq Illumina adapters are BLASTed with a high confidence to some genes/terms
RNAseq adapters Truseq BLAST
updated 4 weeks ago by 70k • written 4 weeks ago by ▴ 30
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3.5k
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Comment: Comment: Methodological problems are extremely common for enrichment analysis - beware th
5 months ago by e.r.zakiev ▴ 30
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0
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3.5k
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Comment: Comment: Methodological problems are extremely common for enrichment analysis - beware th
5 months ago by e.r.zakiev ▴ 30
1
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0
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416
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Answer: Answer: Gene Rank for GSEA Preranked analysis?
5 months ago by e.r.zakiev ▴ 30
22 results • Page 1 of 1
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